CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22038
CDY52785

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	CDY22038	AT4G02220.1	21798944
AT2G41840.1	CDY52785	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	83.33	70.31
CDY42063	Canola	mitochondrion	81.48	45.36
PGSC0003DMT400013052	Potato	cytosol	42.59	21.3
KRH41719	Soybean	nucleus	53.7	20.86
CDY06903	Canola	cytosol	74.07	15.62
CDY45881	Canola	cytosol	74.07	14.49
CDY44553	Canola	cytosol	74.07	14.29
CDY14790	Canola	cytosol	74.07	14.04
CDY22542	Canola	cytosol	70.37	13.48
AT1G58684.1	Thale cress	cytosol	68.52	13.03
AT1G58380.1	Thale cress	cytosol	68.52	13.03
AT1G59359.1	Thale cress	cytosol	68.52	13.03
AT1G58983.1	Thale cress	cytosol	68.52	13.03
KRH60418	Soybean	mitochondrion, nucleus	57.41	11.4
CDX79908	Canola	cytosol	59.26	11.23
CDY35397	Canola	cytosol, extracellular	62.96	11.22
KRH27864	Soybean	nucleus	55.56	10.91
KRH27874	Soybean	nucleus	55.56	10.91
KRH70352	Soybean	endoplasmic reticulum, nucleus	55.56	10.91
AT2G41840.1	Thale cress	cytosol	53.7	10.18
PGSC0003DMT400079142	Potato	cytosol	46.3	9.65
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	46.3	9.16
PGSC0003DMT400063904	Potato	cytosol	46.3	8.93
Solyc04g063290.2.1	Tomato	nucleus	46.3	8.93
Solyc04g074300.2.1	Tomato	nucleus	46.3	8.93
CDY42822	Canola	mitochondrion	12.96	7.37
CDX99877	Canola	mitochondrion, plastid	12.96	6.86
CDX82895	Canola	extracellular	9.26	3.09

Protein Annotations

MapMan:35.1	GO:A0A078JFS5	UniProt:A0A078JFS5	EnsemblPlants:CDY65554	ProteinID:CDY65554	ProteinID:CDY65554.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00046795001	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5
UniParc:UPI0004EEA9B7	:	:	:	:	:

Description

BnaAnng20630DBnaAnng20630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFS5]

Coordinates

chrLK034833:-:3497..3661

Molecular Weight (calculated)

6286.4 Da

IEP (calculated)

4.890

GRAVY (calculated)

-0.480

Length

54 amino acids

Sequence
(BLAST)

1: MLHLTCIQKT YGFITPEFWK ETRFQKSPYQ EYTDLLATKL DSAAKAVTEV EDQA

Best Arabidopsis Sequence Match ( AT1G58684.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.