Factsheet for AT1G58983.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G58684.1	Thale cress	cytosol	100.0	100.0
AT1G59359.1	Thale cress	cytosol	100.0	100.0
AT1G58380.1	Thale cress	cytosol	94.01	94.01
CDY45881	Canola	cytosol	85.92	88.41
Bra035439.1-P	Field mustard	cytosol	86.97	88.21
CDY44553	Canola	cytosol	86.97	88.21
AT3G57490.1	Thale cress	cytosol	83.45	85.87
AT2G41840.1	Thale cress	cytosol	85.92	85.61
KRH60418	Soybean	mitochondrion, nucleus	80.99	84.56
CDY42063	Canola	mitochondrion	28.87	84.54
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	48.59	83.64
KRH27874	Soybean	nucleus	80.63	83.27
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.63	83.27
KRH27864	Soybean	nucleus	80.63	83.27
KRH41719	Soybean	nucleus	39.79	81.3
Zm00001d013034_P001	Maize	plastid	77.82	80.66
Zm00001d034550_P001	Maize	plasma membrane, plastid	77.46	80.29
EER93242	Sorghum	cytosol	77.46	80.29
EER93243	Sorghum	cytosol	77.46	80.29
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	77.11	80.22
PGSC0003DMT400063904	Potato	cytosol	78.87	80.0
Solyc04g074300.2.1	Tomato	nucleus	78.52	79.64
Solyc04g063290.2.1	Tomato	nucleus	78.52	79.64
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	71.13	79.53
Os03t0807800-01	Rice	nucleus	76.41	79.2
TraesCS5B01G468500.1	Wheat	plastid	76.06	78.83
TraesCS5A01G458900.1	Wheat	cytosol	75.7	78.18
Zm00001d019147_P001	Maize	plasma membrane, plastid	76.76	78.14
PGSC0003DMT400079142	Potato	cytosol	71.13	77.99
EER96052	Sorghum	cytosol	76.41	77.78
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	76.06	77.42
TraesCS3A01G366100.1	Wheat	golgi	75.35	76.98
HORVU3Hr1G086050.1	Barley	cytosol	75.0	76.62
GSMUA_AchrUn_...	Banana	cytosol	58.45	76.5
GSMUA_Achr2P07800_001	Banana	cytosol	59.51	76.47
TraesCS3B01G376600.1	Wheat	nucleus	74.65	76.26
TraesCS3D01G338200.1	Wheat	cytosol	74.65	76.26
GSMUA_Achr1P12890_001	Banana	cytosol	58.45	75.8
CDY65554	Canola	cytosol	13.03	68.52
HORVU5Hr1G109910.2	Barley	cytosol	67.96	63.7
GSMUA_Achr8P31470_001	Banana	cytosol	31.69	58.44
OQU76471	Sorghum	cytosol	44.01	57.08
PGSC0003DMT400013052	Potato	cytosol	20.42	53.7
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	11.97	53.12
OQU90562	Sorghum	cytosol, plastid	28.87	42.49

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	EntrezGene:842222	EntrezGene:842229	EntrezGene:842237
UniProt:A0A178W8Q5	ProteinID:AAK62780.1	ProteinID:AAK62784.1	EMBL:AB008017	ProteinID:AEE33559.1	ProteinID:AEE33567.1
ProteinID:AEE33576.1	EMBL:AK220575	ArrayExpress:AT1G58983	EnsemblPlantsGene:AT1G58983	RefSeq:AT1G58983	TAIR:AT1G58983
RefSeq:AT1G58983-TAIR-G	EnsemblPlants:AT1G58983.1	TAIR:AT1G58983.1	EMBL:AY065030	EMBL:AY120723	EMBL:AY133659
Unigene:At.23348	Unigene:At.72872	UniProt:B5BRD8	ProteinID:BAB82426.1	ProteinID:BAB84012.1	ProteinID:BAB84016.1
ProteinID:BAG68918.1	EMBL:BT025727	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0015935	GO:GO:0016020
GO:GO:0019538	GO:GO:0022627	GO:GO:0030312	GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721
RefSeq:NP_564737.1	RefSeq:NP_564740.1	RefSeq:NP_683443.1	ProteinID:OAP13915.1	PFAM:PF00333	PFAM:PF03719
PO:PO:0000293	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	UniProt:Q93VB8
InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS
InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI00000A2A42	SEG:seg

Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]

Coordinates

chr1:-:21805932..21807496

Molecular Weight (calculated)

30773.2 Da

IEP (calculated)

10.942

GRAVY (calculated)

-0.434

Length

284 amino acids

Sequence
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.