Factsheet for Os07t0207400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

nucleus: 23777608
golgi: 25047511
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0578200-00
Os03t0300200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	Os01t0578200-00	AT4G02220.1	21798944
AT2G41840.1	Os03t0300200-01	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41719	Soybean	nucleus	65.45	77.7
PGSC0003DMT400013052	Potato	cytosol	38.18	58.33
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	88.48	57.48
Zm00001d034550_P001	Maize	plasma membrane, plastid	90.91	54.74
Zm00001d013034_P001	Maize	plastid	90.91	54.74
Os03t0807800-01	Rice	nucleus	90.91	54.74
Zm00001d019147_P001	Maize	plasma membrane, plastid	92.12	54.48
EER96052	Sorghum	cytosol	92.12	54.48
EER93242	Sorghum	cytosol	90.3	54.38
EER93243	Sorghum	cytosol	89.7	54.01
KRH60418	Soybean	mitochondrion, nucleus	87.27	52.94
KRH27874	Soybean	nucleus	87.27	52.36
KRH27864	Soybean	nucleus	87.27	52.36
KRH70352	Soybean	endoplasmic reticulum, nucleus	87.27	52.36
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	84.85	51.28
PGSC0003DMT400063904	Potato	cytosol	86.06	50.71
Solyc04g063290.2.1	Tomato	nucleus	86.06	50.71
Solyc04g074300.2.1	Tomato	nucleus	86.06	50.71
AT3G57490.1	Thale cress	cytosol	83.03	49.64
Bra035439.1-P	Field mustard	cytosol	83.03	48.93
AT1G58684.1	Thale cress	cytosol	83.64	48.59
AT1G59359.1	Thale cress	cytosol	83.64	48.59
AT1G58983.1	Thale cress	cytosol	83.64	48.59
AT1G58380.1	Thale cress	cytosol	83.64	48.59
AT2G41840.1	Thale cress	cytosol	83.03	48.07
Bra000242.1-P	Field mustard	cytosol	81.21	47.52
OQU76471	Sorghum	cytosol	63.03	47.49
Bra016913.1-P	Field mustard	cytosol	81.82	47.37
Bra004654.1-P	Field mustard	cytosol	81.82	47.37
PGSC0003DMT400079142	Potato	cytosol	73.33	46.72
GSMUA_Achr8P31470_001	Banana	cytosol	39.39	42.21
GSMUA_Achr1P12890_001	Banana	cytosol	55.76	42.01
GSMUA_AchrUn_...	Banana	cytosol	55.15	41.94
GSMUA_Achr2P07800_001	Banana	cytosol	55.15	41.18
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.94	35.94

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	ProteinID:BAF21072.1	ProteinID:BAT00561.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0022627	InterPro:IPR013810	InterPro:IPR014721	EnsemblPlantsGene:Os07g0207400	EnsemblPlants:Os07t0207400-01	PFAM:PF00333
PFAM:PF03719	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	UniProt:Q0D7V1	InterPro:Ribosomal_S5
InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0000E12A35	SEG:seg	:	:

Description

Similar to RF12 protein (Fragment). (Os07t0207400-01)

Coordinates

chr7:+:5787547..5789223

Molecular Weight (calculated)

17732.8 Da

IEP (calculated)

10.369

GRAVY (calculated)

0.107

Length

165 amino acids

Sequence
(BLAST)

001: AFVVVGDGDG HVGLGVKCAK EVATAIRGAI ILAKLSVVPV RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AAHVPKKVLQ FAGIEDVFTS
101: SRGSTKTLGN FVKATFDCLM KTYGFLTPDF WRETRFIKTP FQEYTDLLAR PKGLVIEAPA EKIEA

Best Arabidopsis Sequence Match ( AT2G41840.1 )
(BLAST)

001: MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA

Arabidopsis Description

RPS2C40S ribosomal protein S2-3 [Source:UniProtKB/Swiss-Prot;Acc:P49688]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.