Factsheet for Zm00001d013034_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d035481_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	Zm00001d035481_P001	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034550_P001	Maize	plasma membrane, plastid	98.54	98.54
EER93243	Sorghum	cytosol	97.45	97.45
EER93242	Sorghum	cytosol	97.08	97.08
Zm00001d019147_P001	Maize	plasma membrane, plastid	94.53	92.83
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	54.74	90.91
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	77.74	83.86
KRH60418	Soybean	mitochondrion, nucleus	83.21	83.82
KRH41719	Soybean	nucleus	42.34	83.45
KRH70352	Soybean	endoplasmic reticulum, nucleus	83.21	82.91
KRH27874	Soybean	nucleus	83.21	82.91
KRH27864	Soybean	nucleus	83.21	82.91
GSMUA_AchrUn_...	Banana	cytosol	64.96	82.03
GSMUA_Achr1P12890_001	Banana	cytosol	65.33	81.74
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	81.39	81.69
GSMUA_Achr2P07800_001	Banana	cytosol	65.69	81.45
Solyc04g063290.2.1	Tomato	nucleus	81.02	79.29
AT3G57490.1	Thale cress	cytosol	79.56	78.99
PGSC0003DMT400063904	Potato	cytosol	80.66	78.93
AT2G41840.1	Thale cress	cytosol	81.75	78.6
Solyc04g074300.2.1	Tomato	nucleus	80.29	78.57
PGSC0003DMT400079142	Potato	cytosol	73.72	77.99
Bra004654.1-P	Field mustard	cytosol	81.02	77.89
AT1G58684.1	Thale cress	cytosol	80.66	77.82
AT1G59359.1	Thale cress	cytosol	80.66	77.82
AT1G58983.1	Thale cress	cytosol	80.66	77.82
Bra016913.1-P	Field mustard	cytosol	80.66	77.54
Bra000242.1-P	Field mustard	cytosol	79.56	77.31
AT1G58380.1	Thale cress	cytosol	79.56	76.76
Bra035439.1-P	Field mustard	cytosol	77.74	76.07
GSMUA_Achr8P31470_001	Banana	cytosol	36.13	64.29
PGSC0003DMT400013052	Potato	cytosol	22.63	57.41
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	7.66	32.81

Protein Annotations

EntrezGene:103625791	MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	UniProt:A0A1D6GF42	ProteinID:AQK62190.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585
PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768
TIGRFAMs:TIGR01020	UniParc:UPI000220B9E2	EnsemblPlantsGene:Zm00001d013034	EnsemblPlants:Zm00001d013034_P001	EnsemblPlants:Zm00001d013034_T001	SEG:seg

Description

40S ribosomal protein S2-1

Coordinates

chr5:-:3494823..3496592

Molecular Weight (calculated)

29819.5 Da

IEP (calculated)

10.877

GRAVY (calculated)

-0.337

Length

274 amino acids

Sequence
(BLAST)

001: MAERGGERGG ERGGFGRGFG RGGRGDRGGR RGGRRGPRQE EEKWVPVTKL GRLVKENKIT KIEEIYLHSL PVKEHQIVET LVPGLKDEVM KITPVQKQTR
101: AGQRTRFKAF VVVGDGDGHV GLGVKCAKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGQP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA RVPKKVLQFA
201: GIEDVFTSSR GSTKTLGNFV KATFDCLMKT YGFLTPEFWS QTKFSMAPFQ QYTDLLAKPT KGLVLEAPTE TVEA

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.