Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013034_P001 | |
| Zm00001d019147_P001 | |
| Zm00001d034550_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P07500_001 | Banana | plastid | 23.17 | 33.04 |
| Zm00001d028812_P010 | Maize | nucleus | 45.12 | 17.79 |
| Zm00001d031819_P001 | Maize | cytosol, nucleus, plastid | 18.9 | 16.49 |
| Zm00001d047689_P002 | Maize | nucleus | 48.17 | 16.09 |
| Solyc08g076440.2.1 | Tomato | nucleus | 33.54 | 15.94 |
| Bra036286.1-P | Field mustard | nucleus | 35.37 | 13.98 |
| CDY22038 | Canola | nucleus | 35.37 | 13.98 |
| VIT_07s0005g00910.t01 | Wine grape | nucleus | 35.37 | 13.91 |
| CDY52785 | Canola | nucleus | 34.15 | 13.43 |
| AT4G02220.1 | Thale cress | nucleus | 33.54 | 13.16 |
| KRH37677 | Soybean | nucleus | 31.1 | 12.56 |
| PGSC0003DMT400038341 | Potato | nucleus | 31.71 | 12.26 |
| KRH24906 | Soybean | nucleus | 29.88 | 12.22 |
| Zm00001d040569_P002 | Maize | cytosol | 23.78 | 10.86 |
| Zm00001d004890_P001 | Maize | cytosol | 21.95 | 9.42 |
| KRG89015 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d035481_P001 | EnsemblPlants:Zm00001d035481_T001 | EnsemblPlantsGene:Zm00001d035481 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| PANTHER:PTHR31549 | PANTHER:PTHR31549:SF29 | ProteinID:AQK79045.1 | SEG:seg | UniParc:UPI0008437049 | UniProt:A0A1D6LGK4 |
| MapMan:35.2 | : | : | : | : | : |
Description
zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein
Coordinates
chr6:-:28892826..28895114
Molecular Weight (calculated)
18688.4 Da
IEP (calculated)
8.269
GRAVY (calculated)
-0.580
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPSNAGDG ELLPMEEHKE RALRHLLRRS KRPLEEFVAA VADVAEQLDD FISDMILKNG KGCFSFVQHN LPNNFRTLNL VENSKNELKS CDRGLFSSVK
101: IFRCQLPRNN AFYSAQPPKH DGSDKPLCPG APVCHWCGTW KGDKICSSCK KARYCYEKHQ FCQL
101: IFRCQLPRNN AFYSAQPPKH DGSDKPLCPG APVCHWCGTW KGDKICSSCK KARYCYEKHQ FCQL
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Arabidopsis Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.