Factsheet for GSMUA_Achr3P07500_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P12890_001
GSMUA_Achr1P22950_001
GSMUA_Achr2P07800_001
GSMUA_Achr8P31470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	GSMUA_Achr1P12890_001	AT1G58684.1	21798944
AT4G02220.1	GSMUA_Achr1P22950_001	AT1G58684.1	21798944
AT4G02220.1	GSMUA_Achr2P07800_001	AT1G58684.1	21798944
AT4G02220.1	GSMUA_Achr8P31470_001	AT1G58684.1	21798944
AT4G02220.1	GSMUA_AchrUn_...	AT1G58684.1	21798944
AT4G02220.1	GSMUA_Achr1P12890_001	AT1G58983.1	21798944
AT4G02220.1	GSMUA_Achr1P22950_001	AT1G58983.1	21798944
AT4G02220.1	GSMUA_Achr2P07800_001	AT1G58983.1	21798944
AT4G02220.1	GSMUA_Achr8P31470_001	AT1G58983.1	21798944
AT4G02220.1	GSMUA_AchrUn_...	AT1G58983.1	21798944
AT4G02220.1	GSMUA_Achr1P12890_001	AT1G59359.1	21798944
AT4G02220.1	GSMUA_Achr1P22950_001	AT1G59359.1	21798944
AT4G02220.1	GSMUA_Achr2P07800_001	AT1G59359.1	21798944
AT4G02220.1	GSMUA_Achr8P31470_001	AT1G59359.1	21798944
AT4G02220.1	GSMUA_AchrUn_...	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035481_P001	Maize	nucleus	33.04	23.17
Solyc08g076440.2.1	Tomato	nucleus	46.96	15.65
VIT_07s0005g00910.t01	Wine grape	nucleus	54.78	15.11
CDY22038	Canola	nucleus	48.7	13.49
KRH37677	Soybean	nucleus	46.96	13.3
Bra036286.1-P	Field mustard	nucleus	47.83	13.25
CDY52785	Canola	nucleus	47.83	13.19
AT4G02220.1	Thale cress	nucleus	47.83	13.16
KRH24906	Soybean	nucleus	45.22	12.97
PGSC0003DMT400038341	Potato	nucleus	46.96	12.74
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	58.26	12.71
KRG89015	Soybean	nucleus	2.61	3.0

Protein Annotations

EnsemblPlants:GSMUA_Achr3P07500_001	EnsemblPlants:GSMUA_Achr3T07500_001	EnsemblPlantsGene:GSMUA_Achr3G07500_001	Gene3D:3.30.60.180	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR002893	InterPro:Znf_MYND	PANTHER:PTHR12298	PANTHER:PTHR12298:SF4	PFAM:PF01753
PFscan:PS50865	ScanProsite:PS01360	SEG:seg	SUPFAM:SSF144232	UniParc:UPI000296FCBA	UniProt:M0SCL7
MapMan:35.2	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G07500_001]

Coordinates

chr3:+:5185776..5187721

Molecular Weight (calculated)

12934.4 Da

IEP (calculated)

9.026

GRAVY (calculated)

-0.597

Length

115 amino acids

Sequence
(BLAST)

001: MTNGFIAMFI TCEVFRCQFP RSNPFYSDEP PRHYGTDKPL RVGAALCSWC GTWKGEKVCS RCRRACYCSE KHQAMHWKSG HKNQCHQIIT NLESSSASAG
101: SSRARLPATD KGQIS

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.