Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g08370.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02220.1 | VIT_08s0007g08370.t01 | AT1G58684.1 | 21798944 |
| AT4G02220.1 | VIT_08s0007g08370.t01 | AT1G58983.1 | 21798944 |
| AT4G02220.1 | VIT_08s0007g08370.t01 | AT1G59359.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37677 | Soybean | nucleus | 56.83 | 58.37 |
| Solyc08g076440.2.1 | Tomato | nucleus | 48.2 | 58.26 |
| PGSC0003DMT400038341 | Potato | nucleus | 56.12 | 55.19 |
| KRH24906 | Soybean | nucleus | 53.0 | 55.11 |
| AT4G02220.1 | Thale cress | nucleus | 55.16 | 55.02 |
| CDY52785 | Canola | nucleus | 54.92 | 54.92 |
| GSMUA_Achr3P07500_001 | Banana | plastid | 15.11 | 54.78 |
| Bra036286.1-P | Field mustard | nucleus | 54.44 | 54.7 |
| CDY22038 | Canola | nucleus | 54.2 | 54.46 |
| KRG89015 | Soybean | nucleus | 12.47 | 52.0 |
| EER92397 | Sorghum | nucleus | 51.56 | 51.81 |
| Os03t0300200-01 | Rice | nucleus | 50.84 | 50.6 |
| TraesCS4D01G189400.1 | Wheat | nucleus | 50.36 | 50.12 |
| TraesCS2D01G317600.1 | Wheat | nucleus | 50.36 | 50.12 |
| TraesCS4B01G188000.1 | Wheat | nucleus | 50.6 | 50.12 |
| TraesCS1B01G115400.1 | Wheat | nucleus | 50.36 | 49.88 |
| HORVU4Hr1G054890.2 | Barley | nucleus | 50.36 | 47.73 |
| TraesCS4A01G116200.2 | Wheat | nucleus | 51.08 | 47.33 |
| Os01t0578200-00 | Rice | cytosol, nucleus | 15.83 | 41.25 |
| HORVU5Hr1G011430.1 | Barley | cytosol | 19.66 | 39.81 |
| TraesCS5D01G058500.1 | Wheat | nucleus | 38.61 | 38.7 |
| TraesCS7A01G534200.1 | Wheat | nucleus | 37.17 | 37.62 |
| TraesCS7B01G451300.1 | Wheat | nucleus | 33.09 | 37.5 |
| TraesCS7D01G521500.1 | Wheat | nucleus | 26.14 | 37.33 |
| OQU91410 | Sorghum | nucleus | 40.05 | 36.38 |
| HORVU5Hr1G045730.3 | Barley | nucleus | 25.9 | 35.41 |
| Zm00001d035481_P001 | Maize | nucleus | 13.91 | 35.37 |
Protein Annotations
| EntrezGene:100241925 | wikigene:100241925 | Gene3D:3.30.60.180 | MapMan:35.2 | ProteinID:CCB59988 | ProteinID:CCB59988.1 |
| UniProt:F6HZ73 | EMBL:FN596502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0046872 | InterPro:IPR002893 | EntrezGene:LOC100241925 | wikigene:LOC100241925 |
| InterPro:PDCD2_C | PFAM:PF01753 | PFAM:PF04194 | ScanProsite:PS01360 | PFscan:PS50865 | PANTHER:PTHR12298 |
| PANTHER:PTHR12298:SF4 | SUPFAM:SSF144232 | UniParc:UPI00015CAF34 | ArrayExpress:VIT_07s0005g00910 | EnsemblPlantsGene:VIT_07s0005g00910 | EnsemblPlants:VIT_07s0005g00910.t01 |
| unigene:Vvi.23630 | RefSeq:XP_002269082 | RefSeq:XP_002269082.1 | RefSeq:XP_002269082.2 | InterPro:Znf_MYND | SEG:seg |
Description
No Description!
Coordinates
chr7:-:3499849..3504585
Molecular Weight (calculated)
47168.0 Da
IEP (calculated)
4.564
GRAVY (calculated)
-0.582
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDEAEMDLD GHSVEEQLKA FQISSLKDED LDEEEGEAAD SNSDVVDDDD CEAEPVTLGF VEKPKNGWSL LCHMFPSKAG GLPAWLDPIN LPSGKSSLCD
101: ICQTPLQFLL QVYAPISEKE STFHRSLFVF MCTSMECILQ DKREQWKCPP EKASRSVKVF RCQLPRSNPF YSSEPPRGDG TDKPSGIGAR LCNWCGTWNG
201: DKVCSSCRKA HYCSEKHQVM HWRSGHKFVC RQMKTSSESS NSIPVNNRTT SNKLEKVASN TLWSEYEIIN EDECEFDIEM SEDNGYSSSL VSNDRSDETF
301: KALLKHFEAD DDKKSWTSFQ ECIGKAPEQV LRYCRSPRAK PVWPISSGRP SQVDAPKCRY CGGPSVFEFQ ILPQLLYYFG VKDDVDCLDW STIAVYTCEA
401: SCEASLSYKE EFAWIQV
101: ICQTPLQFLL QVYAPISEKE STFHRSLFVF MCTSMECILQ DKREQWKCPP EKASRSVKVF RCQLPRSNPF YSSEPPRGDG TDKPSGIGAR LCNWCGTWNG
201: DKVCSSCRKA HYCSEKHQVM HWRSGHKFVC RQMKTSSESS NSIPVNNRTT SNKLEKVASN TLWSEYEIIN EDECEFDIEM SEDNGYSSSL VSNDRSDETF
301: KALLKHFEAD DDKKSWTSFQ ECIGKAPEQV LRYCRSPRAK PVWPISSGRP SQVDAPKCRY CGGPSVFEFQ ILPQLLYYFG VKDDVDCLDW STIAVYTCEA
401: SCEASLSYKE EFAWIQV
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Arabidopsis Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.