Factsheet for HORVU5Hr1G045730.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G086050.1
HORVU5Hr1G109910.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	HORVU3Hr1G086050.1	AT1G58684.1	21798944
AT4G02220.1	HORVU5Hr1G109910.2	AT1G58684.1	21798944
AT4G02220.1	HORVU3Hr1G086050.1	AT1G58983.1	21798944
AT4G02220.1	HORVU5Hr1G109910.2	AT1G58983.1	21798944
AT4G02220.1	HORVU3Hr1G086050.1	AT1G59359.1	21798944
AT4G02220.1	HORVU5Hr1G109910.2	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G521500.1	Wheat	nucleus	71.15	74.32
TraesCS7A01G534200.1	Wheat	nucleus	75.74	56.07
HORVU5Hr1G011430.1	Barley	cytosol	34.75	51.46
TraesCS7B01G451300.1	Wheat	nucleus	60.33	50.0
OQU91410	Sorghum	nucleus	52.13	34.64
HORVU4Hr1G054890.2	Barley	nucleus	41.97	29.09
Solyc08g076440.2.1	Tomato	nucleus	32.13	28.41
Bra036286.1-P	Field mustard	nucleus	37.7	27.71
CDY22038	Canola	nucleus	37.7	27.71
CDY52785	Canola	nucleus	37.38	27.34
KRH37677	Soybean	nucleus	36.07	27.09
KRH24906	Soybean	nucleus	35.41	26.93
AT4G02220.1	Thale cress	nucleus	35.74	26.08
VIT_07s0005g00910.t01	Wine grape	nucleus	35.41	25.9
PGSC0003DMT400038341	Potato	nucleus	34.75	25.0
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	38.03	22.01
Os01t0578200-00	Rice	cytosol, nucleus	5.57	10.62
KRG89015	Soybean	nucleus	2.3	7.0

Protein Annotations

EnsemblPlants:HORVU5Hr1G045730.3	EnsemblPlantsGene:HORVU5Hr1G045730	Gene3D:3.30.60.180	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR002893	InterPro:Znf_MYND	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	PFAM:PF01753	PFscan:PS50865
SEG:seg	SUPFAM:SSF144232	UniParc:UPI000B47F05B	UniProt:A0A287R1C1	MapMan:35.2	:

Description

No Description!

Coordinates

chrchr5H:-:354574702..354576854

Molecular Weight (calculated)

34867.8 Da

IEP (calculated)

4.592

GRAVY (calculated)

-0.650

Length

305 amino acids

Sequence
(BLAST)

001: MEVCSSKLQN LDITSDVPRK MHDDTKEETD PDAIFERDYL EDDYEELEPE VTLGVLRKPK EPGHLHSLLP QHFPSKAGGA PAWLDPVNLP SGKSSCCDFC
101: SDPLRFVLQL YAPDGWKDTT YHRTFFVFMC PSMSCLQLDQ REQVKDRAAN PRRSVKVFRC QLPRINAFYT AEEPKGCMGS QCSAYHARLC DWCGTWKGEI
201: LCSHCSEASY CSSKHQELHW NASHKNDCSQ IPGCRERLFE LPVEGKAFPG HAWPEYVVDQ EPESSCPTCY VKDNSELMVV EGEVEPDAMM QLFMDQFEDD
301: EDNTR

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.