Factsheet for HORVU4Hr1G054890.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G086050.1
HORVU5Hr1G109910.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	HORVU3Hr1G086050.1	AT1G58684.1	21798944
AT4G02220.1	HORVU5Hr1G109910.2	AT1G58684.1	21798944
AT4G02220.1	HORVU3Hr1G086050.1	AT1G58983.1	21798944
AT4G02220.1	HORVU5Hr1G109910.2	AT1G58983.1	21798944
AT4G02220.1	HORVU3Hr1G086050.1	AT1G59359.1	21798944
AT4G02220.1	HORVU5Hr1G109910.2	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G188000.1	Wheat	nucleus	89.32	93.35
TraesCS1B01G115400.1	Wheat	nucleus	88.86	92.87
TraesCS2D01G317600.1	Wheat	nucleus	88.41	92.84
TraesCS4D01G189400.1	Wheat	nucleus	88.18	92.6
TraesCS4A01G116200.2	Wheat	nucleus	85.45	83.56
Os03t0300200-01	Rice	nucleus	75.23	79.0
EER92397	Sorghum	nucleus	71.59	75.9
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	31.59	73.94
Zm00001d028812_P010	Maize	nucleus	61.82	65.38
Zm00001d047689_P002	Maize	nucleus	70.23	62.93
Solyc08g076440.2.1	Tomato	nucleus	45.45	57.97
KRH37677	Soybean	nucleus	49.77	53.94
CDY22038	Canola	nucleus	50.23	53.25
Bra036286.1-P	Field mustard	nucleus	50.0	53.01
AT4G02220.1	Thale cress	nucleus	50.0	52.63
CDY52785	Canola	nucleus	49.77	52.52
PGSC0003DMT400038341	Potato	nucleus	50.23	52.12
VIT_07s0005g00910.t01	Wine grape	nucleus	47.73	50.36
KRH24906	Soybean	nucleus	44.55	48.88
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	58.18	48.58
HORVU5Hr1G011430.1	Barley	cytosol	21.36	45.63
KRG89015	Soybean	nucleus	10.23	45.0
HORVU5Hr1G045730.3	Barley	nucleus	29.09	41.97
Zm00001d004890_P001	Maize	cytosol	36.14	41.62
Zm00001d040569_P002	Maize	cytosol	31.14	38.16

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	EnsemblPlantsGene:HORVU4Hr1G054890	EnsemblPlants:HORVU4Hr1G054890.2	InterPro:IPR002893
UniProt:M0XK86	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360	PFscan:PS50865
PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI0002969122	InterPro:Znf_MYND	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:459824743..459830018

Molecular Weight (calculated)

49605.1 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.570

Length

440 amino acids

Sequence
(BLAST)

001: MEPNADKLRG LRITSLDDED DDETELPNQP LPASTMDVAA AASGYDDDDE DEDEDEEAEV MLGFLEKPKH PGLLLRHLFP SKAGGIPAWL DPVNLPSGNS
101: RCCGFCGEPL HFVLQIYAPI ESNAAAFHRT LFMFMCPSMA CLHRDQHEQW TRNQGNPRRS VRVFRCQLPR TNAFYSSEPP SHNNSDKPLC AGEKLRTVNV
201: LTAETKFDGA ALCHWCGTWK GDKICGSCKK SRYCSEKHQA LHWRSGHKID CLQIINSSEA SSSVLPAVGK VPARSSWPEY QIAIDDEVDL DSDSCDENSS
301: KSLVIQKHGK PDDTMQSWMD QFEADADNRC WAYFQERITR GPKQVLRYCR DPNAKPLWAL SAGRPSNADI PKCSYCKGPL CYEFQIMPQL LYYFGVRNEP
401: DSLDWATVVV YTCQGSCDES ISYMEEFAWV QLYPTSITRP

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.