Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G115400.1 | Wheat | nucleus | 94.54 | 94.54 |
| HORVU4Hr1G054890.2 | Barley | nucleus | 93.35 | 89.32 |
| TraesCS4A01G116200.2 | Wheat | nucleus | 90.74 | 84.89 |
| Os03t0300200-01 | Rice | nucleus | 78.38 | 78.76 |
| EER92397 | Sorghum | nucleus | 75.53 | 76.63 |
| Zm00001d031819_P001 | Maize | cytosol, nucleus, plastid | 33.73 | 75.53 |
| Zm00001d028812_P010 | Maize | nucleus | 64.85 | 65.62 |
| Zm00001d047689_P002 | Maize | nucleus | 73.63 | 63.14 |
| Solyc08g076440.2.1 | Tomato | nucleus | 46.56 | 56.81 |
| KRH37677 | Soybean | nucleus | 51.07 | 52.96 |
| AT4G02220.1 | Thale cress | nucleus | 52.02 | 52.39 |
| Bra036286.1-P | Field mustard | nucleus | 51.07 | 51.81 |
| CDY22038 | Canola | nucleus | 51.07 | 51.81 |
| CDY52785 | Canola | nucleus | 51.07 | 51.56 |
| VIT_07s0005g00910.t01 | Wine grape | nucleus | 50.12 | 50.6 |
| PGSC0003DMT400038341 | Potato | nucleus | 50.83 | 50.47 |
| KRH24906 | Soybean | nucleus | 46.08 | 48.38 |
| GSMUA_Achr6P05130_001 | Banana | mitochondrion, nucleus | 59.86 | 47.82 |
| KRG89015 | Soybean | nucleus | 10.69 | 45.0 |
| TraesCS7B01G451300.1 | Wheat | nucleus | 38.95 | 44.57 |
| Zm00001d004890_P001 | Maize | cytosol | 38.48 | 42.41 |
| Zm00001d040569_P002 | Maize | cytosol | 33.25 | 39.0 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G188000.1 | EnsemblPlantsGene:TraesCS4B01G188000 | Gene3D:3.30.60.180 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | InterPro:IPR002893 | InterPro:PDCD2_C | InterPro:Znf_MYND | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF26 |
| PFAM:PF01753 | PFAM:PF04194 | PFscan:PS50865 | ScanProsite:PS01360 | SEG:seg | SUPFAM:SSF144232 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:408960793..408964071
Molecular Weight (calculated)
47358.3 Da
IEP (calculated)
4.790
GRAVY (calculated)
-0.559
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNADVLRG LRITSLDDED DDETELPNQP LPTTTATLAA AASGYDDEDE DEDEEAEVML GFLEKPKHPG LLLRHLFPSK AGGIPAWLDP VNLPSGNSSC
101: CGFCGEPLHF VLQIYAPIEN NAAAFHRTLF MFMCPSMACL HRDQHEQWTR NQGNPRRSVR VFRCQLPRAN AYYSSEPPSH NNSDKPLCAG AALCHWCGTW
201: KGDKICGSCK KSRYCSEKHQ ALHWRSGHKN DCLQIINSSE ASSSVLPAVG KVPARTSWLE YQIAIDDEVD LDSDGCDENS SKSLVMQKHG KPDDTMQSWM
301: DQFEADADNR CWAYFQERIS RAPEQVLRYC RDPNVKPLWA LSAGRPSNAD IPSCSYCKGP LCYEFQIMPQ LLYYFGVRNE PDSLDWATIV VYTCQGSCDQ
401: NISYKEEFAW AQLYPTSISR P
101: CGFCGEPLHF VLQIYAPIEN NAAAFHRTLF MFMCPSMACL HRDQHEQWTR NQGNPRRSVR VFRCQLPRAN AYYSSEPPSH NNSDKPLCAG AALCHWCGTW
201: KGDKICGSCK KSRYCSEKHQ ALHWRSGHKN DCLQIINSSE ASSSVLPAVG KVPARTSWLE YQIAIDDEVD LDSDGCDENS SKSLVMQKHG KPDDTMQSWM
301: DQFEADADNR CWAYFQERIS RAPEQVLRYC RDPNVKPLWA LSAGRPSNAD IPSCSYCKGP LCYEFQIMPQ LLYYFGVRNE PDSLDWATIV VYTCQGSCDQ
401: NISYKEEFAW AQLYPTSISR P
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Arabidopsis Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.