Factsheet for TraesCS5B01G468500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G115400.1
TraesCS2D01G317600.1
TraesCS4A01G116200.2
TraesCS4B01G188000.1
TraesCS4D01G189400.1
TraesCS5D01G058500.1
TraesCS7A01G534200.1
TraesCS7B01G451300.1
TraesCS7D01G521500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	TraesCS1B01G115400.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS2D01G317600.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS4A01G116200.2	AT4G02220.1	21798944
AT2G41840.1	TraesCS4B01G188000.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS4D01G189400.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS5D01G058500.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7A01G534200.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7B01G451300.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7D01G521500.1	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G458900.1	Wheat	cytosol	99.27	98.91
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	99.27	97.49
TraesCS3B01G376600.1	Wheat	nucleus	96.35	94.96
Os03t0807800-01	Rice	nucleus	92.7	92.7
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	76.64	82.68
KRH60418	Soybean	mitochondrion, nucleus	81.75	82.35
KRH41719	Soybean	nucleus	41.61	82.01
KRH70352	Soybean	endoplasmic reticulum, nucleus	82.12	81.82
KRH27864	Soybean	nucleus	82.12	81.82
KRH27874	Soybean	nucleus	82.12	81.82
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	81.02	81.32
GSMUA_AchrUn_...	Banana	cytosol	64.23	81.11
GSMUA_Achr2P07800_001	Banana	cytosol	64.6	80.09
GSMUA_Achr1P12890_001	Banana	cytosol	63.87	79.91
AT3G57490.1	Thale cress	cytosol	79.93	79.35
PGSC0003DMT400063904	Potato	cytosol	80.66	78.93
HORVU5Hr1G109910.2	Barley	cytosol	87.23	78.88
Solyc04g063290.2.1	Tomato	nucleus	80.29	78.57
Solyc04g074300.2.1	Tomato	nucleus	80.29	78.57
AT2G41840.1	Thale cress	cytosol	80.66	77.54
PGSC0003DMT400079142	Potato	cytosol	72.99	77.22
Bra016913.1-P	Field mustard	cytosol	80.29	77.19
Bra004654.1-P	Field mustard	cytosol	80.29	77.19
Bra000242.1-P	Field mustard	cytosol	79.2	76.95
AT1G59359.1	Thale cress	cytosol	78.83	76.06
AT1G58983.1	Thale cress	cytosol	78.83	76.06
AT1G58684.1	Thale cress	cytosol	78.83	76.06
Bra035439.1-P	Field mustard	cytosol	77.37	75.71
AT1G58380.1	Thale cress	cytosol	78.1	75.35
GSMUA_Achr8P31470_001	Banana	cytosol	36.13	64.29
PGSC0003DMT400013052	Potato	cytosol	23.36	59.26
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	8.39	35.94

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	InterPro:IPR013810	InterPro:IPR014721	PFAM:PF00333
PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5
InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc
SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	EnsemblPlantsGene:TraesCS5B01G468500	EnsemblPlants:TraesCS5B01G468500.1	SEG:seg

Description

No Description!

Coordinates

chr5B:+:641925983..641927485

Molecular Weight (calculated)

29944.7 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.330

Length

274 amino acids

Sequence
(BLAST)

001: MADRGGERGV DRGGFGRGFG RGGRGDRGGR RGGRRGPRQE EEKWVPVTKL GRLVKEGRFT KMEEIYLHSL PVKEHQIVET LCPGLKDEVM KITPVQKQTR
101: AGQRTRFKAF VVVGDSNGHV GLGVKCAKEV ATAIRGAIIL AKLSIVPVRR GYWGNKIGLP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA RVPKKVLQFA
201: GIDDVFTSSR GSTKTLGNFV KATFDCLMKT YGFLTPDFWR ETTFTKAPYQ EFTDILAKPT KALMLDAPAE KVEA

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.