Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G58684.1 | Thale cress | cytosol | 85.61 | 85.92 |
| AT1G58983.1 | Thale cress | cytosol | 85.61 | 85.92 |
| AT1G59359.1 | Thale cress | cytosol | 85.61 | 85.92 |
| AT1G58380.1 | Thale cress | cytosol | 84.56 | 84.86 |
| AT3G57490.1 | Thale cress | cytosol | 81.75 | 84.42 |
| CDY45881 | Canola | cytosol | 80.7 | 83.33 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 80.35 | 83.27 |
| KRH60418 | Soybean | mitochondrion, nucleus | 79.3 | 83.09 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 48.07 | 83.03 |
| KRH27864 | Soybean | nucleus | 80.0 | 82.91 |
| KRH27874 | Soybean | nucleus | 79.65 | 82.55 |
| EER93243 | Sorghum | cytosol | 78.95 | 82.12 |
| EER93242 | Sorghum | cytosol | 78.95 | 82.12 |
| Solyc04g063290.2.1 | Tomato | nucleus | 80.35 | 81.79 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 78.6 | 81.75 |
| Zm00001d013034_P001 | Maize | plastid | 78.6 | 81.75 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 72.63 | 81.5 |
| PGSC0003DMT400063904 | Potato | cytosol | 80.0 | 81.43 |
| CDY44553 | Canola | cytosol | 80.0 | 81.43 |
| Bra035439.1-P | Field mustard | cytosol | 80.0 | 81.43 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 77.89 | 81.32 |
| Solyc04g074300.2.1 | Tomato | nucleus | 79.65 | 81.07 |
| Os03t0807800-01 | Rice | nucleus | 77.89 | 81.02 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 77.89 | 80.73 |
| PGSC0003DMT400079142 | Potato | cytosol | 73.33 | 80.69 |
| TraesCS5B01G468500.1 | Wheat | plastid | 77.54 | 80.66 |
| KRH41719 | Soybean | nucleus | 39.3 | 80.58 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 77.89 | 79.57 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 77.89 | 79.57 |
| EER96052 | Sorghum | cytosol | 77.89 | 79.57 |
| TraesCS3A01G366100.1 | Wheat | golgi | 77.19 | 79.14 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 76.49 | 78.42 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 76.49 | 78.42 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 76.49 | 78.42 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 60.35 | 77.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.95 | 77.42 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 58.95 | 76.71 |
| CDY42063 | Canola | mitochondrion | 25.96 | 76.29 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 67.72 | 63.7 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 31.58 | 58.44 |
| OQU76471 | Sorghum | cytosol | 41.75 | 54.34 |
| CDY65554 | Canola | cytosol | 10.18 | 53.7 |
| PGSC0003DMT400013052 | Potato | cytosol | 20.0 | 52.78 |
| OQU90562 | Sorghum | cytosol, plastid | 28.42 | 41.97 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.12 | 40.62 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | EntrezGene:818784 | ProteinID:AAC02764.1 | ProteinID:AEC10039.1 |
| ArrayExpress:AT2G41840 | EnsemblPlantsGene:AT2G41840 | RefSeq:AT2G41840 | TAIR:AT2G41840 | RefSeq:AT2G41840-TAIR-G | EnsemblPlants:AT2G41840.1 |
| TAIR:AT2G41840.1 | EMBL:AY048250 | EMBL:AY133561 | Unigene:At.12251 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0022627 |
| GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR013810 | InterPro:IPR014721 | RefSeq:NP_181715.1 | UniProt:P49688 |
| PFAM:PF00333 | PFAM:PF03719 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00585 |
| PFscan:PS50881 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold |
| InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N | InterPro:Ribosomal_S5_N_CS | InterPro:Ribosomal_S5_euk/arc | SUPFAM:SSF54211 | SUPFAM:SSF54768 |
| TIGRFAMs:TIGR01020 | UniParc:UPI0000000BAF | EMBL:Z17622 | SEG:seg | : | : |
Description
RPS2C40S ribosomal protein S2-3 [Source:UniProtKB/Swiss-Prot;Acc:P49688]
Coordinates
chr2:-:17459685..17461539
Molecular Weight (calculated)
30880.5 Da
IEP (calculated)
10.977
GRAVY (calculated)
-0.411
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.