CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89015
KRH24906
KRH37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	KRG89015	AT4G02220.1	21798944
AT2G41840.1	KRH24906	AT4G02220.1	21798944
AT2G41840.1	KRH37677	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41719	Soybean	nucleus	48.9	95.68
KRH27864	Soybean	nucleus	96.69	95.64
KRH27874	Soybean	nucleus	96.69	95.64
KRH70352	Soybean	endoplasmic reticulum, nucleus	96.69	95.64
GSMUA_AchrUn_...	Banana	cytosol	69.85	87.56
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	52.94	87.27
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	87.5	87.18
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	81.25	87.01
GSMUA_Achr1P12890_001	Banana	cytosol	69.85	86.76
GSMUA_Achr2P07800_001	Banana	cytosol	69.85	85.97
CDY06903	Canola	cytosol	80.88	85.94
Solyc04g074300.2.1	Tomato	nucleus	88.24	85.71
PGSC0003DMT400063904	Potato	cytosol	88.24	85.71
Solyc04g063290.2.1	Tomato	nucleus	87.87	85.36
AT3G57490.1	Thale cress	cytosol	85.66	84.42
CDY45881	Canola	cytosol	85.66	84.42
PGSC0003DMT400079142	Potato	cytosol	79.78	83.78
Os03t0807800-01	Rice	nucleus	84.19	83.58
Zm00001d013034_P001	Maize	plastid	83.82	83.21
Zm00001d034550_P001	Maize	plasma membrane, plastid	83.82	83.21
EER93242	Sorghum	cytosol	83.09	82.48
EER93243	Sorghum	cytosol	83.09	82.48
AT1G58380.1	Thale cress	cytosol	85.66	82.04
CDY22542	Canola	cytosol	84.93	81.91
TraesCS5B01G468500.1	Wheat	plastid	82.35	81.75
Bra000242.1-P	Field mustard	cytosol	84.56	81.56
CDX79908	Canola	cytosol	85.29	81.4
CDY44553	Canola	cytosol	83.46	81.07
Bra035439.1-P	Field mustard	cytosol	83.46	81.07
Bra004654.1-P	Field mustard	cytosol	84.93	81.05
AT1G58684.1	Thale cress	cytosol	84.56	80.99
AT1G58983.1	Thale cress	cytosol	84.56	80.99
AT1G59359.1	Thale cress	cytosol	84.56	80.99
TraesCS5A01G458900.1	Wheat	cytosol	81.62	80.73
Bra016913.1-P	Field mustard	cytosol	84.56	80.7
CDY14790	Canola	cytosol	84.56	80.7
Zm00001d019147_P001	Maize	plasma membrane, plastid	82.35	80.29
EER96052	Sorghum	cytosol	81.99	79.93
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	81.99	79.93
TraesCS3A01G366100.1	Wheat	golgi	81.25	79.5
TraesCS3B01G376600.1	Wheat	nucleus	81.25	79.5
CDY42063	Canola	mitochondrion	28.31	79.38
AT2G41840.1	Thale cress	cytosol	83.09	79.3
TraesCS3D01G338200.1	Wheat	cytosol	80.88	79.14
HORVU3Hr1G086050.1	Barley	cytosol	80.15	78.42
CDY35397	Canola	cytosol, extracellular	84.56	75.91
GSMUA_Achr8P31470_001	Banana	cytosol	38.97	68.83
HORVU5Hr1G109910.2	Barley	cytosol	74.63	67.0
PGSC0003DMT400013052	Potato	cytosol	23.9	60.19
OQU76471	Sorghum	cytosol	48.16	59.82
CDY65554	Canola	cytosol	11.4	57.41
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	10.66	45.31
OQU90562	Sorghum	cytosol, plastid	29.78	41.97

Protein Annotations

EntrezGene:100797105	MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	EMBL:ACUP02003364	EnsemblPlantsGene:GLYMA_05G239000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1K5K3	InterPro:IPR013810	InterPro:IPR014721
EnsemblPlants:KRH60418	ProteinID:KRH60418	ProteinID:KRH60418.1	PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585
PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768
TIGRFAMs:TIGR01020	UniParc:UPI0001BA67CB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:41489721..41491777

Molecular Weight (calculated)

29833.5 Da

IEP (calculated)

11.021

GRAVY (calculated)

-0.365

Length

272 amino acids

Sequence
(BLAST)

001: MAERGGGDRA GFGRGFGGRG RGGDRGRGRR RAGGRRDEEE KWVPVTKLGR LVKEGKIRSL EQIYLHSLPI KEHQIIDTLV GPTLKDEVMK IMPVQKQTRA
101: GQRTRFKAFV VVGDNNGHVG LGVKCSKEVA TAIRGAIILA KLSVIPVRRG YWGNKIGKPH TVPCKVTGKC GSVTVRMVPA PRGSGIVAAR VPKKVLQFAG
201: IDDVFTSSRG STKTLGNFVK ATFDCLLKTY GFLTPEFWKE TRFSKSPFQE YTDLLAKPTG KALILEEERV EA

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.