CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27864
KRH27874
KRH41719
KRH60418
KRH70352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	KRH27864	AT1G58684.1	21798944
AT4G02220.1	KRH27874	AT1G58684.1	21798944
AT4G02220.1	KRH41719	AT1G58684.1	21798944
AT4G02220.1	KRH60418	AT1G58684.1	21798944
AT4G02220.1	KRH70352	AT1G58684.1	21798944
AT4G02220.1	KRH27864	AT1G58983.1	21798944
AT4G02220.1	KRH27874	AT1G58983.1	21798944
AT4G02220.1	KRH41719	AT1G58983.1	21798944
AT4G02220.1	KRH60418	AT1G58983.1	21798944
AT4G02220.1	KRH70352	AT1G58983.1	21798944
AT4G02220.1	KRH27864	AT1G59359.1	21798944
AT4G02220.1	KRH27874	AT1G59359.1	21798944
AT4G02220.1	KRH41719	AT1G59359.1	21798944
AT4G02220.1	KRH60418	AT1G59359.1	21798944
AT4G02220.1	KRH70352	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0578200-00	Rice	cytosol, nucleus	34.0	21.25
KRH24906	Soybean	nucleus	77.0	19.2
KRH37677	Soybean	nucleus	72.0	17.73
VIT_07s0005g00910.t01	Wine grape	nucleus	52.0	12.47
PGSC0003DMT400038341	Potato	nucleus	48.0	11.32
TraesCS4B01G188000.1	Wheat	nucleus	45.0	10.69
EER92397	Sorghum	nucleus	43.0	10.36
TraesCS2D01G317600.1	Wheat	nucleus	43.0	10.26
Os03t0300200-01	Rice	nucleus	43.0	10.26
TraesCS4D01G189400.1	Wheat	nucleus	43.0	10.26
HORVU4Hr1G054890.2	Barley	nucleus	45.0	10.23
TraesCS1B01G115400.1	Wheat	nucleus	43.0	10.21
AT4G02220.1	Thale cress	nucleus	41.0	9.81
TraesCS4A01G116200.2	Wheat	nucleus	44.0	9.78
CDY22038	Canola	nucleus	40.0	9.64
CDY52785	Canola	nucleus	40.0	9.59
Bra036286.1-P	Field mustard	nucleus	39.0	9.4
OQU91410	Sorghum	nucleus	39.0	8.5
TraesCS5D01G058500.1	Wheat	nucleus	33.0	7.93
Solyc08g076440.2.1	Tomato	nucleus	27.0	7.83
TraesCS7A01G534200.1	Wheat	nucleus	30.0	7.28
TraesCS7B01G451300.1	Wheat	nucleus	22.0	5.98
GSMUA_Achr3P07500_001	Banana	plastid	3.0	2.61
TraesCS7D01G521500.1	Wheat	nucleus	7.0	2.4
HORVU5Hr1G045730.3	Barley	nucleus	7.0	2.3
HORVU5Hr1G011430.1	Barley	cytosol	2.0	0.97
Zm00001d035481_P001	Maize	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:KRG89015	EnsemblPlantsGene:GLYMA_U019500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:PDCD2_C	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	PFAM:PF04194	ProteinID:KRG89015	ProteinID:KRG89015.1
UniParc:UPI0003DEB44C	UniProt:A0A0R0EE29	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:+:3238013..3240294

Molecular Weight (calculated)

11365.1 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.728

Length

100 amino acids

Sequence
(BLAST)

1: MITIEDESEY NRDMSEENTL ANSLISRNRT HDTMNSLLDS FEGDDDKKSW ASFRECIAKV PEQVLRGTNA KPIWPVSSGR PSNADIPRYS YCTGVQTYVL

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.