Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22038 | Canola | nucleus | 83.25 | 83.86 |
| Bra036286.1-P | Field mustard | nucleus | 83.01 | 83.61 |
| CDY52785 | Canola | nucleus | 81.58 | 81.77 |
| Solyc08g076440.2.1 | Tomato | nucleus | 46.65 | 56.52 |
| VIT_07s0005g00910.t01 | Wine grape | nucleus | 55.02 | 55.16 |
| KRH37677 | Soybean | nucleus | 53.35 | 54.93 |
| EER92397 | Sorghum | nucleus | 53.11 | 53.49 |
| Os03t0300200-01 | Rice | nucleus | 52.87 | 52.74 |
| TraesCS2D01G317600.1 | Wheat | nucleus | 52.63 | 52.51 |
| TraesCS1B01G115400.1 | Wheat | nucleus | 52.63 | 52.26 |
| TraesCS4D01G189400.1 | Wheat | nucleus | 52.15 | 52.03 |
| TraesCS4B01G188000.1 | Wheat | nucleus | 52.39 | 52.02 |
| PGSC0003DMT400038341 | Potato | nucleus | 52.39 | 51.65 |
| KRH24906 | Soybean | nucleus | 48.8 | 50.87 |
| HORVU4Hr1G054890.2 | Barley | nucleus | 52.63 | 50.0 |
| TraesCS4A01G116200.2 | Wheat | nucleus | 52.63 | 48.89 |
| GSMUA_Achr3P07500_001 | Banana | plastid | 13.16 | 47.83 |
| Os01t0578200-00 | Rice | cytosol, nucleus | 17.46 | 45.62 |
| HORVU5Hr1G011430.1 | Barley | cytosol | 20.81 | 42.23 |
| KRG89015 | Soybean | nucleus | 9.81 | 41.0 |
| TraesCS5D01G058500.1 | Wheat | nucleus | 39.23 | 39.42 |
| TraesCS7B01G451300.1 | Wheat | nucleus | 33.97 | 38.59 |
| TraesCS7A01G534200.1 | Wheat | nucleus | 37.8 | 38.35 |
| OQU91410 | Sorghum | nucleus | 40.67 | 37.04 |
| TraesCS7D01G521500.1 | Wheat | nucleus | 25.84 | 36.99 |
| HORVU5Hr1G045730.3 | Barley | nucleus | 26.08 | 35.74 |
| Zm00001d035481_P001 | Maize | nucleus | 13.16 | 33.54 |
Protein Annotations
| Gene3D:3.30.60.180 | MapMan:35.2 | EntrezGene:828106 | UniProt:A0A178UYP9 | ProteinID:AEE82142.1 | ArrayExpress:AT4G02220 |
| EnsemblPlantsGene:AT4G02220 | RefSeq:AT4G02220 | TAIR:AT4G02220 | RefSeq:AT4G02220-TAIR-G | EnsemblPlants:AT4G02220.1 | TAIR:AT4G02220.1 |
| EMBL:AY035129 | EMBL:AY056352 | Unigene:At.3873 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0046872 | InterPro:IPR002893 | RefSeq:NP_567225.1 |
| ProteinID:OAO98244.1 | InterPro:PDCD2_C | PFAM:PF01753 | PFAM:PF04194 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF26 | UniProt:Q93VB4 |
| SUPFAM:SSF144232 | UniParc:UPI00000A4135 | InterPro:Znf_MYND | SEG:seg | : | : |
Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
Coordinates
chr4:+:976246..979163
Molecular Weight (calculated)
47495.5 Da
IEP (calculated)
4.530
GRAVY (calculated)
-0.649
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.