Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g063290.2.1 | |
| Solyc04g074300.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400038341 | Potato | nucleus | 86.96 | 70.75 |
| VIT_07s0005g00910.t01 | Wine grape | nucleus | 58.26 | 48.2 |
| Os03t0300200-01 | Rice | nucleus | 57.97 | 47.73 |
| KRH37677 | Soybean | nucleus | 55.94 | 47.54 |
| TraesCS1B01G115400.1 | Wheat | nucleus | 57.97 | 47.51 |
| TraesCS2D01G317600.1 | Wheat | nucleus | 57.68 | 47.49 |
| TraesCS4D01G189400.1 | Wheat | nucleus | 57.39 | 47.26 |
| Bra036286.1-P | Field mustard | nucleus | 56.52 | 46.99 |
| GSMUA_Achr3P07500_001 | Banana | plastid | 15.65 | 46.96 |
| EER92397 | Sorghum | nucleus | 56.23 | 46.75 |
| AT4G02220.1 | Thale cress | nucleus | 56.52 | 46.65 |
| TraesCS4B01G188000.1 | Wheat | nucleus | 56.81 | 46.56 |
| CDY22038 | Canola | nucleus | 55.94 | 46.51 |
| CDY52785 | Canola | nucleus | 55.07 | 45.56 |
| HORVU4Hr1G054890.2 | Barley | nucleus | 57.97 | 45.45 |
| TraesCS4A01G116200.2 | Wheat | nucleus | 56.81 | 43.56 |
| KRH24906 | Soybean | nucleus | 47.83 | 41.15 |
| Os01t0578200-00 | Rice | cytosol, nucleus | 18.55 | 40.0 |
| HORVU5Hr1G011430.1 | Barley | cytosol | 22.61 | 37.86 |
| TraesCS7B01G451300.1 | Wheat | nucleus | 40.29 | 37.77 |
| TraesCS7A01G534200.1 | Wheat | nucleus | 42.9 | 35.92 |
| OQU91410 | Sorghum | nucleus | 47.54 | 35.73 |
| TraesCS7D01G521500.1 | Wheat | nucleus | 29.86 | 35.27 |
| TraesCS5D01G058500.1 | Wheat | nucleus | 41.74 | 34.62 |
| Zm00001d035481_P001 | Maize | nucleus | 15.94 | 33.54 |
| HORVU5Hr1G045730.3 | Barley | nucleus | 28.41 | 32.13 |
| KRG89015 | Soybean | nucleus | 7.83 | 27.0 |
Protein Annotations
| Gene3D:3.30.60.180 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0046872 | InterPro:IPR002893 | UniProt:K4CN07 | InterPro:PDCD2_C |
| PFAM:PF01753 | PFAM:PF04194 | ScanProsite:PS01360 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF4 |
| SUPFAM:SSF144232 | EnsemblPlantsGene:Solyc08g076440.2 | EnsemblPlants:Solyc08g076440.2.1 | UniParc:UPI000276BEC1 | InterPro:Znf_MYND | SEG:seg |
Description
No Description!
Coordinates
chr8:+:60447660..60452139
Molecular Weight (calculated)
39126.9 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.655
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGSKALLR GLYVDSYDDD DETEEEDEDK EPVGLGVLEK PENSWSLLRE LFPSKAGGTP AWLDPINLPT GKSCLCDICG EPLQFMLQVY APLTEKDSTF
101: HRTLFLFMCT SMTCLLKDQH EQWKRNQDKQ SRSVKVFRCQ LPRDNSFYSS EPPRNNGKDK PSSPGAVLCG WCGTWKGDKV CGGCRRVHYC SEKHQTVHWK
201: SGHKQRCLPS SISQDASEPS NSKTLREVQE VASKSLCFEE RISRTPEQVL RYYRDAGAKP LWPTSSGQPS KADIPKCTYC GDHRAFEFQV LPQILYYFGV
301: ENDVHSLDWA TIAVYTCESS CDGHIAYKEE FAWVQIASQS STTQR
101: HRTLFLFMCT SMTCLLKDQH EQWKRNQDKQ SRSVKVFRCQ LPRDNSFYSS EPPRNNGKDK PSSPGAVLCG WCGTWKGDKV CGGCRRVHYC SEKHQTVHWK
201: SGHKQRCLPS SISQDASEPS NSKTLREVQE VASKSLCFEE RISRTPEQVL RYYRDAGAKP LWPTSSGQPS KADIPKCTYC GDHRAFEFQV LPQILYYFGV
301: ENDVHSLDWA TIAVYTCESS CDGHIAYKEE FAWVQIASQS STTQR
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Arabidopsis Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.