Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU5Hr1G045730.3 | Barley | nucleus | 74.32 | 71.15 |
TraesCS7B01G451300.1 | Wheat | nucleus | 76.71 | 60.87 |
TraesCS7A01G534200.1 | Wheat | nucleus | 81.51 | 57.77 |
TraesCS5D01G058500.1 | Wheat | nucleus | 56.16 | 39.42 |
OQU91410 | Sorghum | nucleus | 53.08 | 33.77 |
Solyc08g076440.2.1 | Tomato | nucleus | 35.27 | 29.86 |
TraesCS4D01G189400.1 | Wheat | nucleus | 41.44 | 28.88 |
TraesCS2D01G317600.1 | Wheat | nucleus | 41.44 | 28.88 |
KRH37677 | Soybean | nucleus | 39.73 | 28.57 |
KRH24906 | Soybean | nucleus | 39.04 | 28.43 |
Bra036286.1-P | Field mustard | nucleus | 39.04 | 27.47 |
CDY22038 | Canola | nucleus | 39.04 | 27.47 |
CDY52785 | Canola | nucleus | 38.7 | 27.1 |
VIT_07s0005g00910.t01 | Wine grape | nucleus | 37.33 | 26.14 |
AT4G02220.1 | Thale cress | nucleus | 36.99 | 25.84 |
PGSC0003DMT400038341 | Potato | nucleus | 36.99 | 25.47 |
GSMUA_Achr6P05130_001 | Banana | mitochondrion, nucleus | 39.73 | 22.01 |
Os01t0578200-00 | Rice | cytosol, nucleus | 6.51 | 11.88 |
KRG89015 | Soybean | nucleus | 2.4 | 7.0 |
Protein Annotations
EnsemblPlants:TraesCS7D01G521500.1 | EnsemblPlantsGene:TraesCS7D01G521500 | Gene3D:3.30.60.180 | InterPro:IPR002893 | InterPro:Znf_MYND | PANTHER:PTHR12298 |
PANTHER:PTHR12298:SF26 | PFAM:PF01753 | PFscan:PS50865 | SEG:seg | SUPFAM:SSF144232 | MapMan:35.2 |
Description
No Description!
Coordinates
chr7D:-:618710823..618712453
Molecular Weight (calculated)
32922.7 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.464
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDGTKAGAE PDDAIFERDY LDDDNEEELE PEVTLGVLWK PKEPWDFHSL LPQHFPSKAG GAPAWLDPVN LPSGKSSCCD FCGDPLRFVM QVYVPDGWKE
101: TTFHRAFFVF MCPSMSCLQL DQREQGKDKA ANPRRSVKVF RCQLPRINAF YTPEEPKGCV GSQCSGAHRS RLCDWCGTWK GEILCSHCSK ASYCSRKHQE
201: LHWHASHEND CSQIPGSPDA SILPVAAKVF PGHAWPEYAV DHEPEPSCST SSIKDNSELM MVEGEVESDA MMQLFMDQFE VFFVLWPMLP YS
101: TTFHRAFFVF MCPSMSCLQL DQREQGKDKA ANPRRSVKVF RCQLPRINAF YTPEEPKGCV GSQCSGAHRS RLCDWCGTWK GEILCSHCSK ASYCSRKHQE
201: LHWHASHEND CSQIPGSPDA SILPVAAKVF PGHAWPEYAV DHEPEPSCST SSIKDNSELM MVEGEVESDA MMQLFMDQFE VFFVLWPMLP YS
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Arabidopsis Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.