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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 plasma membrane: 18260611
plasma membrane: 18557835
nucleus: 19621931
nucleus: 23303719
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0578200-00
Os03t0300200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41840.1 Os01t0578200-00 AT4G02220.1 21798944
AT2G41840.1 Os03t0300200-01 AT4G02220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G468500.1 Wheat plastid 92.7 92.7
TraesCS5A01G458900.1 Wheat cytosol 92.7 92.36
TraesCS5D01G470000.1 Wheat extracellular, golgi, plastid, unclear 92.7 91.04
TraesCS3A01G366100.1 Wheat golgi 92.34 91.01
Os07t0207400-01 Rice cytosol, golgi, nucleus, plasma membrane 54.74 90.91
TraesCS3B01G376600.1 Wheat nucleus 91.24 89.93
TraesCS3D01G338200.1 Wheat cytosol 90.88 89.57
HORVU3Hr1G086050.1 Barley cytosol 90.15 88.85
GSMUA_Achr1P22950_001 Banana cytosol, endoplasmic reticulum, nucleus 78.83 85.04
KRH60418 Soybean mitochondrion, nucleus 83.58 84.19
VIT_08s0007g08370.t01 Wine grape cytosol, endoplasmic reticulum, nucleus 83.58 83.88
KRH27864 Soybean nucleus 83.94 83.64
KRH70352 Soybean endoplasmic reticulum, nucleus 83.94 83.64
KRH27874 Soybean nucleus 83.94 83.64
KRH41719 Soybean nucleus 42.34 83.45
GSMUA_AchrUn_... Banana cytosol 64.96 82.03
GSMUA_Achr1P12890_001 Banana cytosol 64.96 81.28
GSMUA_Achr2P07800_001 Banana cytosol 65.33 81.0
Solyc04g063290.2.1 Tomato nucleus 81.75 80.0
PGSC0003DMT400063904 Potato cytosol 81.39 79.64
Solyc04g074300.2.1 Tomato nucleus 81.02 79.29
AT3G57490.1 Thale cress cytosol 79.56 78.99
Bra016913.1-P Field mustard cytosol 82.12 78.95
PGSC0003DMT400079142 Potato cytosol 74.45 78.76
Bra000242.1-P Field mustard cytosol 80.66 78.37
Bra004654.1-P Field mustard cytosol 81.39 78.25
AT2G41840.1 Thale cress cytosol 81.02 77.89
Bra035439.1-P Field mustard cytosol 78.83 77.14
AT1G59359.1 Thale cress cytosol 79.2 76.41
AT1G58983.1 Thale cress cytosol 79.2 76.41
AT1G58684.1 Thale cress cytosol 79.2 76.41
AT1G58380.1 Thale cress cytosol 78.1 75.35
HORVU5Hr1G109910.2 Barley cytosol 81.02 73.27
GSMUA_Achr8P31470_001 Banana cytosol 37.59 66.88
PGSC0003DMT400013052 Potato cytosol 23.72 60.19
Bra027857.1-P Field mustard cytosol, mitochondrion, nucleus 9.12 39.06
Protein Annotations
MapMan:17.1.3.1.2Gene3D:3.30.160.770Gene3D:3.30.230.10EntrezGene:4334512ProteinID:AAP21434.1ProteinID:ABF99457.1
EMBL:AK064984ProteinID:BAF13559.1ProteinID:BAF21072.1ProteinID:BAS86964.1ProteinID:BAT00561.1GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015935GO:GO:0019538
GO:GO:0022627InterPro:IPR013810InterPro:IPR014721EnsemblPlantsGene:Os03g0807800EnsemblPlants:Os03t0807800-01PFAM:PF00333
PFAM:PF03719ScanProsite:PS00585PFscan:PS50881PANTHER:PTHR13718PANTHER:PTHR13718:SF74UniProt:Q84M35
InterPro:Ribosomal_S5InterPro:Ribosomal_S5_CInterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrInterPro:Ribosomal_S5_NInterPro:Ribosomal_S5_N_CS
InterPro:Ribosomal_S5_euk/arcSUPFAM:SSF54211SUPFAM:SSF54768TIGRFAMs:TIGR01020UniParc:UPI00001909CCRefSeq:XP_015630550.1
SEG:seg:::::
Description
Omnipotent suppressor protein SUP44Similar to 40S ribosomal protein S2 (Fragment). (Os03t0807800-01)
Coordinates
chr3:+:33769018..33770893
Molecular Weight (calculated)
29977.6 Da
IEP (calculated)
10.936
GRAVY (calculated)
-0.362
Length
274 amino acids
Sequence
(BLAST)
001: MAERGGERGG ERGGFGRGFG RGGRGDRGGR RGGRRGPRQE EEKWVPVTKL GRLVKEGRFS KIEEIYLHSL PVKEHQIVET LVPGLKDEVM KITPVQKQTR
101: AGQRTRFKAF VVVGDNNGHV GLGVKCAKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGQP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA RVPKKVLQFA
201: GIEDVFTSSR GSTKTLGNFV KATFDCLMKT YGFLTPDFWR DTKFVKSPFQ EYTDLLAKPT KALMIDAPVE NVEA
Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
Arabidopsis Description
RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.