Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra036286.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | Bra036286.1-P | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65554 | Canola | cytosol | 70.31 | 83.33 |
| PGSC0003DMT400013052 | Potato | cytosol | 34.38 | 20.37 |
| KRH41719 | Soybean | nucleus | 42.19 | 19.42 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 35.94 | 14.94 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 35.94 | 13.94 |
| Bra035439.1-P | Field mustard | cytosol | 57.81 | 13.21 |
| Bra016913.1-P | Field mustard | cytosol | 57.81 | 12.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.62 | 11.98 |
| AT1G58684.1 | Thale cress | cytosol | 53.12 | 11.97 |
| AT1G58380.1 | Thale cress | cytosol | 53.12 | 11.97 |
| AT1G58983.1 | Thale cress | cytosol | 53.12 | 11.97 |
| AT1G59359.1 | Thale cress | cytosol | 53.12 | 11.97 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 39.06 | 11.31 |
| Bra000242.1-P | Field mustard | cytosol | 48.44 | 10.99 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 37.5 | 10.96 |
| KRH60418 | Soybean | mitochondrion, nucleus | 45.31 | 10.66 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 40.62 | 10.24 |
| KRH27864 | Soybean | nucleus | 43.75 | 10.18 |
| KRH27874 | Soybean | nucleus | 43.75 | 10.18 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 43.75 | 10.18 |
| Bra004654.1-P | Field mustard | cytosol | 45.31 | 10.18 |
| Os03t0807800-01 | Rice | nucleus | 39.06 | 9.12 |
| AT2G41840.1 | Thale cress | cytosol | 40.62 | 9.12 |
| PGSC0003DMT400079142 | Potato | cytosol | 35.94 | 8.88 |
| OQU76471 | Sorghum | cytosol | 29.69 | 8.68 |
| TraesCS3A01G366100.1 | Wheat | golgi | 37.5 | 8.63 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 35.94 | 8.42 |
| TraesCS5B01G468500.1 | Wheat | plastid | 35.94 | 8.39 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 35.94 | 8.36 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 35.94 | 8.27 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 35.94 | 8.27 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 35.94 | 8.27 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 35.94 | 8.24 |
| PGSC0003DMT400063904 | Potato | cytosol | 35.94 | 8.21 |
| Solyc04g063290.2.1 | Tomato | nucleus | 35.94 | 8.21 |
| Solyc04g074300.2.1 | Tomato | nucleus | 35.94 | 8.21 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 34.38 | 7.89 |
| EER96052 | Sorghum | cytosol | 34.38 | 7.89 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 32.81 | 7.66 |
| Zm00001d013034_P001 | Maize | plastid | 32.81 | 7.66 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 35.94 | 7.59 |
| EER93242 | Sorghum | cytosol | 31.25 | 7.3 |
| EER93243 | Sorghum | cytosol | 31.25 | 7.3 |
| OQU90562 | Sorghum | cytosol, plastid | 3.12 | 1.04 |
Protein Annotations
| EnsemblPlants:Bra027857.1 | EnsemblPlants:Bra027857.1-P | EnsemblPlantsGene:Bra027857 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:Ribosomal_S5 |
| PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 | UniParc:UPI00025427C2 | UniProt:M4EGE3 | MapMan:35.2 | : |
Description
AT1G58380 (E=1e-015) XW6 | XW6; structural constituent of ribosome
Coordinates
chrA09:+:9313376..9314638
Molecular Weight (calculated)
7363.6 Da
IEP (calculated)
4.983
GRAVY (calculated)
-0.733
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MGWPRIKLDM SIGDNSSKKT YGFITPEFWK ETRFQKSPYQ EYTDLLATKL DSAAKAVTEV EDQA
001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
Arabidopsis Description
RPS2AAt1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.