Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | EER92397 | AT4G02220.1 | 21798944 |
| AT2G41840.1 | OQU91410 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41719 | Soybean | nucleus | 41.1 | 64.75 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 47.49 | 63.03 |
| EER96052 | Sorghum | cytosol | 69.86 | 54.84 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 68.49 | 53.76 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 53.42 | 52.94 |
| OQU90562 | Sorghum | cytosol, plastid | 46.12 | 52.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 51.6 | 52.07 |
| EER93242 | Sorghum | cytosol | 64.84 | 51.82 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 51.6 | 51.6 |
| EER93243 | Sorghum | cytosol | 64.38 | 51.46 |
| PGSC0003DMT400013052 | Potato | cytosol | 25.11 | 50.93 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 57.08 | 49.21 |
| KRH60418 | Soybean | mitochondrion, nucleus | 59.82 | 48.16 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 60.27 | 48.0 |
| KRH27864 | Soybean | nucleus | 60.27 | 48.0 |
| KRH27874 | Soybean | nucleus | 60.27 | 48.0 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 59.36 | 47.62 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 33.33 | 47.4 |
| AT3G57490.1 | Thale cress | cytosol | 57.08 | 45.29 |
| Bra035439.1-P | Field mustard | cytosol | 56.62 | 44.29 |
| AT1G58983.1 | Thale cress | cytosol | 57.08 | 44.01 |
| AT1G58684.1 | Thale cress | cytosol | 57.08 | 44.01 |
| AT1G59359.1 | Thale cress | cytosol | 57.08 | 44.01 |
| AT1G58380.1 | Thale cress | cytosol | 57.08 | 44.01 |
| PGSC0003DMT400063904 | Potato | cytosol | 56.16 | 43.93 |
| Solyc04g063290.2.1 | Tomato | nucleus | 56.16 | 43.93 |
| Solyc04g074300.2.1 | Tomato | nucleus | 56.16 | 43.93 |
| Bra000242.1-P | Field mustard | cytosol | 55.71 | 43.26 |
| Bra016913.1-P | Field mustard | cytosol | 56.16 | 43.16 |
| PGSC0003DMT400079142 | Potato | cytosol | 50.68 | 42.86 |
| Bra004654.1-P | Field mustard | cytosol | 55.71 | 42.81 |
| AT2G41840.1 | Thale cress | cytosol | 54.34 | 41.75 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 8.68 | 29.69 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | UniProt:A0A1W0VT88 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR014721 | EnsemblPlants:OQU76471 | ProteinID:OQU76471 | ProteinID:OQU76471.1 | PFAM:PF03719 | PANTHER:PTHR13718 |
| PANTHER:PTHR13718:SF74 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | EnsemblPlantsGene:SORBI_3010G150575 |
| SUPFAM:SSF54211 | UniParc:UPI0009DC8CC0 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:43378469..43381792
Molecular Weight (calculated)
23636.7 Da
IEP (calculated)
8.384
GRAVY (calculated)
-0.144
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVGPAGGDP LGRPRCHVTT WDQQHTAPNA PHLHLLPVKE HQIVEQLVPG LKDEVTKITP VQRTRFKAFD VVGEAMDTSG SASTLGRASQ GARQEEVLGE
101: QIGQPHTVPC KVTVKCGSVT VRMVPVPTGS GIVAACVPKK VLQFAGIEDV FTSSRGFTKT LGNFVKTTFD CLMKTYGFLT PEFCTETKYM KTPFLESTDL
201: LAKPTKGLLI KAPTETVEA
101: QIGQPHTVPC KVTVKCGSVT VRMVPVPTGS GIVAACVPKK VLQFAGIEDV FTSSRGFTKT LGNFVKTTFD CLMKTYGFLT PEFCTETKYM KTPFLESTDL
201: LAKPTKGLLI KAPTETVEA
001: MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
Arabidopsis Description
RPS2C40S ribosomal protein S2-3 [Source:UniProtKB/Swiss-Prot;Acc:P49688]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.