CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000242.1-P	Field mustard	cytosol	93.07	100.0
CDY22542	Canola	cytosol	90.76	97.52
CDY06903	Canola	cytosol	81.19	96.09
CDY14790	Canola	cytosol	88.45	94.04
CDX79908	Canola	cytosol	87.46	92.98
CDY45881	Canola	cytosol	80.53	88.41
CDY44553	Canola	cytosol	79.87	86.43
KRH60418	Soybean	mitochondrion, nucleus	75.91	84.56
CDY42063	Canola	mitochondrion	27.06	84.54
AT3G57490.1	Thale cress	cytosol	76.24	83.7
KRH70352	Soybean	endoplasmic reticulum, nucleus	75.58	83.27
KRH27874	Soybean	nucleus	75.58	83.27
KRH27864	Soybean	nucleus	75.58	83.27
PGSC0003DMT400063904	Potato	cytosol	75.91	82.14
KRH41719	Soybean	nucleus	37.62	82.01
Solyc04g063290.2.1	Tomato	nucleus	75.58	81.79
Solyc04g074300.2.1	Tomato	nucleus	75.58	81.79
PGSC0003DMT400079142	Potato	cytosol	68.65	80.31
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	72.28	80.22
CDY65554	Canola	cytosol	11.22	62.96
PGSC0003DMT400013052	Potato	cytosol	19.8	55.56
CDX82895	Canola	extracellular	27.06	50.62
CDY42822	Canola	mitochondrion	15.84	50.53
CDX99877	Canola	mitochondrion, plastid	15.84	47.06

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:A0A078HC75	UniProt:A0A078HC75	EnsemblPlants:CDY35397
ProteinID:CDY35397	ProteinID:CDY35397.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00058381001	InterPro:IPR013810	InterPro:IPR014721
PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79
InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS
InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	SignalP:SignalP-noTM	TIGRFAMs:TIGR01020	UniParc:UPI0004EE41B7
SEG:seg	:	:	:	:	:

Description

BnaA03g19630DBnaA03g19630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC75]

Coordinates

chrLK032351:+:142955..146153

Molecular Weight (calculated)

32852.0 Da

IEP (calculated)

10.804

GRAVY (calculated)

-0.346

Length

303 amino acids

Sequence
(BLAST)

001: MIGFFFFFLG LPTLATHSDS KMAERGGERG AERGGDRGGF GRGFGGRAGG RGGPRGRGGR RGGRPTEEEK WTPVTKLGRL VQSGKIQKLE QIYLHSLPVK
101: EYQIIDLLVG PTLKDEVMKI MPVQKQTRAG QRTRFKAFVV VGDTNGHVGL GVKCSKEVAT AIRGGIILAK LSVIPVRRGY WGNKIGKPHT VPCKVTGKCG
201: SVTVRMVPAP RGAGIVAARV PKKVLQFAGI DDVFTSSRGS TKTLGNFVKA TFDCLQKTYG FLTPEFWKET SFKKSPYQEY TDLLAEKGTP TTKAITEAED
301: QAS

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.