Factsheet for Zm00001d031819_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004890_P001	Maize	cytosol	93.09	45.81
Zm00001d028812_P010	Maize	nucleus	93.62	42.31
Zm00001d040569_P002	Maize	cytosol	77.66	40.67
Os03t0300200-01	Rice	nucleus	79.26	35.56
TraesCS4B01G188000.1	Wheat	nucleus	75.53	33.73
TraesCS2D01G317600.1	Wheat	nucleus	74.47	33.41
TraesCS1B01G115400.1	Wheat	nucleus	74.47	33.25
TraesCS4D01G189400.1	Wheat	nucleus	73.94	33.17
Zm00001d047689_P002	Maize	nucleus	85.11	32.59
HORVU4Hr1G054890.2	Barley	nucleus	73.94	31.59
TraesCS4A01G116200.2	Wheat	nucleus	74.47	31.11
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	54.26	19.35
Zm00001d035481_P001	Maize	nucleus	16.49	18.9

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	UniProt:A0A1D6KLE9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	InterPro:IPR002893	ProteinID:ONM03716.1
InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26
SUPFAM:SSF144232	UniParc:UPI000842CC84	EnsemblPlantsGene:Zm00001d031819	EnsemblPlants:Zm00001d031819_P001	EnsemblPlants:Zm00001d031819_T001	InterPro:Znf_MYND

Description

zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein

Coordinates

chr1:-:202907478..202908879

Molecular Weight (calculated)

21086.7 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.621

Length

188 amino acids

Sequence
(BLAST)

001: MPKNLLPAHV CHWCGTWKGD KICSSCKKAR YCSEKHQALH WGTGHKNDCL QIISSSAASN SVLPTVGKVP ANTSWPEFEI KIDYEGIFDS DSGDENNSKL
101: LVMQRHGKPD AMMQSWMDQF EADSDNKCWT SFQERVSRAP NQVLRYCREP NAKPLWALSS GCPSNADIPS CSYCKDPLCY EFQVGQSS

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.