Factsheet for Zm00001d047689_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92397	Sorghum	nucleus	78.0	92.29
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	32.59	85.11
Os03t0300200-01	Rice	nucleus	69.04	80.91
Zm00001d028812_P010	Maize	nucleus	67.01	79.09
TraesCS4B01G188000.1	Wheat	nucleus	63.14	73.63
TraesCS2D01G317600.1	Wheat	nucleus	62.73	73.51
TraesCS4D01G189400.1	Wheat	nucleus	62.32	73.03
TraesCS1B01G115400.1	Wheat	nucleus	62.53	72.92
HORVU4Hr1G054890.2	Barley	nucleus	62.93	70.23
TraesCS4A01G116200.2	Wheat	nucleus	62.93	68.67
Zm00001d035481_P001	Maize	nucleus	16.09	48.17
Zm00001d004890_P001	Maize	cytosol	36.86	47.38
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	50.1	46.68
Zm00001d040569_P002	Maize	cytosol	31.57	43.18

Protein Annotations

EntrezGene:103639246	Gene3D:3.30.60.180	MapMan:35.2	UniProt:A0A1D6PCF3	ProteinID:AQL07300.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872
InterPro:IPR002893	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360	PFscan:PS50865
PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI000843EEF4	EnsemblPlantsGene:Zm00001d047689	EnsemblPlants:Zm00001d047689_P002
EnsemblPlants:Zm00001d047689_T002	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein

Coordinates

chr9:+:139363842..139370232

Molecular Weight (calculated)

55079.0 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.399

Length

491 amino acids

Sequence
(BLAST)

001: METSTKKLSS LRITSLDDDD DETEIPHQPP QAGLSTAEAD YEDDDDEEEE AEVTLGVLSK PKHPGLLLRH LFPSKAGGIP AWLDPVNLPS GKSSYCGFCG
101: EPLQFVLQIY APIEDNVAAF HRTLFMFMCP SMACLLRDQH EQWKHKYGNP CRSVKIFRCQ LPRNNAFYSA QPPKHDGSDK PLCPGAPVCH WCGTWKGDKI
201: CSSCKKARYC SEKHQALHWR TGHKNDCLQI ISSAASNSVL PAVGIVPASI SWPEFEIKID YEGTFDSDSG DENNSKSLVM QRHGKLDAMM QSWMDHFEAD
301: ADNKCWASFQ ERVSRAPNQV LRYCREPNAK PLWALSFGCP SDADIPSCSY CRGPLCYEFQ VMPQLLYFFG VGNQPDSLDW ATIVVYTCQG SCDQTVSYKE
401: EFAWVQLYPT TTTRRSVYRL NSCDQLGIDR NHRQVHTSFG YWNFEIGCGF NVSRSIGRAG SFKHLPTVAQ CLVLVTVPLI HLGTILGPTN T

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.