Factsheet for Zm00001d028812_P010

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	42.31	93.62
Os03t0300200-01	Rice	nucleus	70.91	70.41
Zm00001d047689_P002	Maize	nucleus	79.09	67.01
TraesCS4B01G188000.1	Wheat	nucleus	65.62	64.85
TraesCS2D01G317600.1	Wheat	nucleus	65.14	64.68
TraesCS1B01G115400.1	Wheat	nucleus	65.38	64.61
TraesCS4D01G189400.1	Wheat	nucleus	64.42	63.96
HORVU4Hr1G054890.2	Barley	nucleus	65.38	61.82
TraesCS4A01G116200.2	Wheat	nucleus	65.38	60.44
Zm00001d004890_P001	Maize	cytosol	44.95	48.95
Zm00001d040569_P002	Maize	cytosol	40.14	46.52
Zm00001d035481_P001	Maize	nucleus	17.79	45.12
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	50.72	40.04

Protein Annotations

EntrezGene:103634523	Gene3D:3.30.60.180	MapMan:35.2	UniProt:A0A1D6JZS7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	InterPro:IPR002893
ProteinID:ONL97090.1	ProteinID:ONL97091.1	ProteinID:ONL97092.1	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194
PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI000844166B	EnsemblPlantsGene:Zm00001d028812
EnsemblPlants:Zm00001d028812_P010	EnsemblPlants:Zm00001d028812_T010	InterPro:Znf_MYND	SEG:seg	:	:

Description

zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein

Coordinates

chr1:-:47211780..47217612

Molecular Weight (calculated)

46561.1 Da

IEP (calculated)

7.257

GRAVY (calculated)

-0.512

Length

416 amino acids

Sequence
(BLAST)

001: MESSAKKLSS LRITSLDGDD DETEDPHQPP PAGPSAAAAD SDDDDEEEEA EVTLGVLSKP KHPGLLLRHL FPSKAGGIPA WLDPVNLPSG KSSCCGFCGE
101: PLQFVLQIYA AVEDNVAAFH RTLFMFMCPS MACLLRDQHE QWKHKHGNPC RSVKVFRCQL PRTNAFYSAQ PPKHDRSDKP LCPGGSAYLL LHGRTYGTCK
201: FYSKEVYLEL YLSRGCQRVN VTKFFQMPKY LLPAHVCHWC GTWKGDKICS SCKKARYCSE KHQALHWRTG HKNDCLQIIS SSAASNSVLP TVGKVPANTF
301: WPEFEIKIDY EGRFDSDSGD ENNSKLLVMQ RHGKPDAMMQ SWMDQFEADS DNKCWASFQE RVSRAPNQVL RYCREPNAKP LWALSSGCPS NADIPSCSYC
401: KGPLCYEFQV GQISSL

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.