Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400029374 | |
PGSC0003DMT400035458 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G47610.1 | PGSC0003DMT400029374 | AT1G30860.1 | 21798944 |
AT2G47610.1 | PGSC0003DMT400035458 | AT1G30860.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400083237 | Potato | cytosol | 88.44 | 52.21 |
Solyc06g050120.2.1 | Tomato | nucleus | 91.16 | 51.74 |
PGSC0003DMT400057989 | Potato | cytosol | 88.44 | 50.39 |
PGSC0003DMT400008912 | Potato | cytosol, plastid | 84.35 | 48.63 |
AT2G47610.1 | Thale cress | cytosol | 74.83 | 42.8 |
KRH31699 | Soybean | cytosol, nucleus | 74.83 | 42.31 |
KRH29218 | Soybean | endoplasmic reticulum, nucleus | 74.15 | 42.08 |
KRH24214 | Soybean | nucleus | 74.15 | 42.08 |
KRH69083 | Soybean | nucleus | 74.15 | 41.92 |
Os09t0507800-01 | Rice | nucleus, plasma membrane | 72.79 | 41.47 |
Os08t0326400-01 | Rice | cytosol | 72.79 | 41.47 |
EER99158 | Sorghum | cytosol | 72.79 | 41.47 |
AT3G62870.1 | Thale cress | cytosol | 72.11 | 41.41 |
Bra004442.1-P | Field mustard | cytosol | 72.11 | 41.41 |
Bra014387.1-P | Field mustard | cytosol | 72.11 | 41.41 |
Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 72.11 | 41.09 |
Zm00001d006100_P001 | Maize | plasma membrane | 72.11 | 41.09 |
TraesCS5D01G296200.1 | Wheat | cytosol | 72.11 | 40.93 |
TraesCS5B01G287900.1 | Wheat | cytosol | 72.11 | 40.93 |
TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 72.11 | 40.93 |
GSMUA_Achr10P... | Banana | cytosol | 74.15 | 40.82 |
TraesCS7D01G262800.2 | Wheat | cytosol | 71.43 | 40.7 |
TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 71.43 | 40.7 |
Zm00001d031640_P001 | Maize | mitochondrion | 70.75 | 40.47 |
TraesCS7B01G159700.1 | Wheat | cytosol | 70.75 | 40.31 |
Bra000455.1-P | Field mustard | cytosol | 73.47 | 39.71 |
GSMUA_Achr11P... | Banana | cytosol | 73.47 | 38.99 |
HORVU7Hr1G054670.5 | Barley | cytosol | 70.75 | 38.52 |
HORVU5Hr1G076700.2 | Barley | cytosol | 72.79 | 37.68 |
VIT_14s0083g00970.t01 | Wine grape | plastid | 75.51 | 36.88 |
GSMUA_Achr3P03600_001 | Banana | cytosol | 70.75 | 36.24 |
KXG35979 | Sorghum | cytosol, mitochondrion | 72.79 | 32.33 |
GSMUA_Achr6P21550_001 | Banana | cytosol | 72.11 | 30.55 |
GSMUA_Achr6P14640_001 | Banana | cytosol | 74.15 | 28.68 |
KRH15988 | Soybean | cytosol | 14.97 | 28.21 |
Bra013849.1-P | Field mustard | cytosol | 72.11 | 26.24 |
Bra019201.1-P | Field mustard | cytosol | 72.11 | 25.18 |
Bra003512.1-P | Field mustard | cytosol | 62.59 | 22.72 |
TraesCS4D01G148500.2 | Wheat | cytosol | 21.09 | 21.09 |
Os01t0924800-00 | Rice | cytosol, golgi | 22.45 | 20.89 |
CDY55536 | Canola | cytosol | 9.52 | 13.46 |
CDX93958 | Canola | cytosol | 9.52 | 13.46 |
CDX89151 | Canola | cytosol | 9.52 | 13.33 |
CDY25120 | Canola | cytosol | 6.12 | 7.2 |
KXG25835 | Sorghum | cytosol | 0.0 | 0.0 |
EES03046 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400015879 | EnsemblPlantsGene:PGSC0003DMG400006207 | Gene3D:3.30.1330.210 | InterPro:IPR038524 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf |
ncoils:Coil | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | PGSC:PGSC0003DMG400006207 | PRINTS:PR00882 | SEG:seg |
UniParc:UPI000295F04E | UniProt:M1A6R6 | MapMan:17.1.2.1.6 | : | : | : |
Description
60S ribosomal protein L7A [Source:PGSC_GENE;Acc:PGSC0003DMG400006207]
Coordinates
chr10:-:42864267..42864710
Molecular Weight (calculated)
17181.7 Da
IEP (calculated)
11.645
GRAVY (calculated)
-0.789
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKKGVAVA AKKKAEKTWK VVNPLLEKRP KHFGIGVALR RKKDVTRNVR RPRNVTLQRK KRILKMRLKV PPALNQFTKT LDKNLATNLF KMLLKYRPED
101: KAAKKERLVK RAEAEEKTHE RKKPIIVKYG LKHTTYLIEQ INKAQLV
101: KAAKKERLVK RAEAEEKTHE RKKPIIVKYG LKHTTYLIEQ INKAQLV
001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
Arabidopsis Description
RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.