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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400083237 Potato cytosol 88.44 52.21
Solyc06g050120.2.1 Tomato nucleus 91.16 51.74
PGSC0003DMT400057989 Potato cytosol 88.44 50.39
PGSC0003DMT400008912 Potato cytosol, plastid 84.35 48.63
AT2G47610.1 Thale cress cytosol 74.83 42.8
KRH31699 Soybean cytosol, nucleus 74.83 42.31
KRH29218 Soybean endoplasmic reticulum, nucleus 74.15 42.08
KRH24214 Soybean nucleus 74.15 42.08
KRH69083 Soybean nucleus 74.15 41.92
Os09t0507800-01 Rice nucleus, plasma membrane 72.79 41.47
Os08t0326400-01 Rice cytosol 72.79 41.47
EER99158 Sorghum cytosol 72.79 41.47
AT3G62870.1 Thale cress cytosol 72.11 41.41
Bra004442.1-P Field mustard cytosol 72.11 41.41
Bra014387.1-P Field mustard cytosol 72.11 41.41
Zm00001d021061_P001 Maize cytosol, mitochondrion, plasma membrane 72.11 41.09
Zm00001d006100_P001 Maize plasma membrane 72.11 41.09
TraesCS5D01G296200.1 Wheat cytosol 72.11 40.93
TraesCS5B01G287900.1 Wheat cytosol 72.11 40.93
TraesCS5A01G288400.1 Wheat cytosol, golgi, nucleus, plastid, unclear 72.11 40.93
GSMUA_Achr10P... Banana cytosol 74.15 40.82
TraesCS7D01G262800.2 Wheat cytosol 71.43 40.7
TraesCS7A01G261600.1 Wheat cytosol, plastid 71.43 40.7
Zm00001d031640_P001 Maize mitochondrion 70.75 40.47
TraesCS7B01G159700.1 Wheat cytosol 70.75 40.31
Bra000455.1-P Field mustard cytosol 73.47 39.71
GSMUA_Achr11P... Banana cytosol 73.47 38.99
HORVU7Hr1G054670.5 Barley cytosol 70.75 38.52
HORVU5Hr1G076700.2 Barley cytosol 72.79 37.68
VIT_14s0083g00970.t01 Wine grape plastid 75.51 36.88
GSMUA_Achr3P03600_001 Banana cytosol 70.75 36.24
KXG35979 Sorghum cytosol, mitochondrion 72.79 32.33
GSMUA_Achr6P21550_001 Banana cytosol 72.11 30.55
GSMUA_Achr6P14640_001 Banana cytosol 74.15 28.68
KRH15988 Soybean cytosol 14.97 28.21
Bra013849.1-P Field mustard cytosol 72.11 26.24
Bra019201.1-P Field mustard cytosol 72.11 25.18
Bra003512.1-P Field mustard cytosol 62.59 22.72
TraesCS4D01G148500.2 Wheat cytosol 21.09 21.09
Os01t0924800-00 Rice cytosol, golgi 22.45 20.89
CDY55536 Canola cytosol 9.52 13.46
CDX93958 Canola cytosol 9.52 13.46
CDX89151 Canola cytosol 9.52 13.33
CDY25120 Canola cytosol 6.12 7.2
KXG25835 Sorghum cytosol 0.0 0.0
EES03046 Sorghum cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400015879EnsemblPlantsGene:PGSC0003DMG400006207Gene3D:3.30.1330.210InterPro:IPR038524InterPro:Ribosomal_L7A/L8InterPro:Ribosomal_L7A/L8_sf
ncoils:CoilPANTHER:PTHR23105PANTHER:PTHR23105:SF70PGSC:PGSC0003DMG400006207PRINTS:PR00882SEG:seg
UniParc:UPI000295F04EUniProt:M1A6R6MapMan:17.1.2.1.6:::
Description
60S ribosomal protein L7A [Source:PGSC_GENE;Acc:PGSC0003DMG400006207]
Coordinates
chr10:-:42864267..42864710
Molecular Weight (calculated)
17181.7 Da
IEP (calculated)
11.645
GRAVY (calculated)
-0.789
Length
147 amino acids
Sequence
(BLAST)
001: MAPKKGVAVA AKKKAEKTWK VVNPLLEKRP KHFGIGVALR RKKDVTRNVR RPRNVTLQRK KRILKMRLKV PPALNQFTKT LDKNLATNLF KMLLKYRPED
101: KAAKKERLVK RAEAEEKTHE RKKPIIVKYG LKHTTYLIEQ INKAQLV
Best Arabidopsis Sequence Match ( AT2G47610.1 )
(BLAST)
001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
Arabidopsis Description
RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.