Factsheet for VIT_14s0083g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99158	Sorghum	cytosol	76.74	89.53
Zm00001d006100_P001	Maize	plasma membrane	76.41	89.15
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	76.08	88.76
Os09t0507800-01	Rice	nucleus, plasma membrane	76.08	88.76
Os08t0326400-01	Rice	cytosol	76.08	88.76
TraesCS7D01G262800.2	Wheat	cytosol	75.75	88.37
TraesCS7A01G261600.1	Wheat	cytosol, plastid	75.75	88.37
Zm00001d031640_P001	Maize	mitochondrion	75.42	88.33
TraesCS7B01G159700.1	Wheat	cytosol	75.42	87.98
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	75.42	87.64
TraesCS5D01G296200.1	Wheat	cytosol	75.42	87.64
TraesCS5B01G287900.1	Wheat	cytosol	75.42	87.64
AT3G62870.1	Thale cress	cytosol	72.43	85.16
GSMUA_Achr10P...	Banana	cytosol	75.42	85.02
AT2G47610.1	Thale cress	cytosol	72.09	84.44
Os01t0924800-00	Rice	cytosol, golgi	44.19	84.18
HORVU7Hr1G054670.5	Barley	cytosol	75.42	84.07
Bra004442.1-P	Field mustard	cytosol	71.43	83.98
Bra014387.1-P	Field mustard	cytosol	71.1	83.59
GSMUA_Achr11P...	Banana	cytosol	74.75	81.23
HORVU5Hr1G076700.2	Barley	cytosol	76.41	80.99
GSMUA_Achr3P03600_001	Banana	cytosol	76.08	79.79
VIT_17s0000g00980.t01	Wine grape	cytosol	79.07	79.33
Solyc01g097760.2.1	Tomato	nucleus	67.44	78.68
PGSC0003DMT400057989	Potato	cytosol	67.44	78.68
Bra000455.1-P	Field mustard	cytosol	71.1	78.68
PGSC0003DMT400008912	Potato	cytosol, plastid	66.45	78.43
Solyc06g064470.2.1	Tomato	nucleus	67.11	78.29
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	67.11	78.29
Solyc06g050120.2.1	Tomato	nucleus	67.11	77.99
VIT_14s0068g01640.t01	Wine grape	mitochondrion	77.41	77.67
PGSC0003DMT400015879	Potato	cytosol	36.88	75.51
PGSC0003DMT400083237	Potato	cytosol	60.47	73.09
KXG35979	Sorghum	cytosol, mitochondrion	77.74	70.69
Solyc10g018810.1.1	Tomato	cytosol	17.61	68.83
GSMUA_Achr6P21550_001	Banana	cytosol	76.08	65.99
EES03046	Sorghum	cytosol	14.29	63.24
KXG25835	Sorghum	cytosol	13.95	61.76
GSMUA_Achr6P14640_001	Banana	cytosol	76.74	60.79
Solyc11g042870.1.1	Tomato	cytosol	17.28	59.09
Solyc01g020290.1.1	Tomato	cytosol	9.97	55.56
Bra013849.1-P	Field mustard	cytosol	72.76	54.21
Bra003512.1-P	Field mustard	cytosol	65.78	48.89
Bra019201.1-P	Field mustard	cytosol	67.77	48.46
TraesCS4D01G148500.2	Wheat	cytosol	17.28	35.37
CDY55536	Canola	cytosol	8.31	24.04
CDX93958	Canola	cytosol	8.31	24.04
CDX89151	Canola	cytosol	8.31	23.81
CDY25120	Canola	cytosol	6.31	15.2

Protein Annotations

EntrezGene:100266932	wikigene:100266932	MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	EMBL:AM455085	ProteinID:CAN81023
ProteinID:CAN81023.1	ProteinID:CCB44085	ProteinID:CCB44085.1	ncoils:Coil	UniProt:F6GVV0	EMBL:FN594955
GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904	InterPro:IPR029064	InterPro:IPR038524
InterPro:L30e-like	EntrezGene:LOC100266932	wikigene:LOC100266932	PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882
ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	TIGR:TC52489	UniParc:UPI0002108C3A	ArrayExpress:VIT_14s0083g00970
EnsemblPlantsGene:VIT_14s0083g00970	EnsemblPlants:VIT_14s0083g00970.t01	unigene:Vvi.3154	RefSeq:XP_002281689	RefSeq:XP_002281689.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:23215781..23219760

Molecular Weight (calculated)

33952.2 Da

IEP (calculated)

11.096

GRAVY (calculated)

-0.546

Length

301 amino acids

Sequence
(BLAST)

001: MKNPPNQTAK FGFFRIKPSE KPPVLTQPPA AAHRVPSQLS LQLMGPKKGG KAAVPAKKKT EKVVNPLFEK RPKQFGIGGA LPPKKDLTRF VKWPHVVRIQ
101: RKRRILRQRL KVPPALNQFT KTLDKNLATN LFKMLLKYRP EDKAAKKERL LKRAQAEAEG KTAESKKPIV VKYGLNHITY LIEQNKAQLV VIAHDVDPIE
201: LVVWLPALCR KMEVPYAIVK GKSRLGAIVH KKTATALCLT SVKNEDKLEF SKIVEAVKAN FNDKYDEYRK RWGGGIMGSK SQAKTKAKEK LIAKEAAQRM
301: S

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.