Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
23198870
plasma membrane: 23508561 plasma membrane: 27341663 |
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d006417_P002 | |
| Zm00001d021532_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | Zm00001d006417_P002 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | Zm00001d021532_P001 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 99.61 | 99.61 |
| Zm00001d031640_P001 | Maize | mitochondrion | 98.45 | 98.83 |
| EER99158 | Sorghum | cytosol | 98.45 | 98.45 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 98.06 | 98.06 |
| Os08t0326400-01 | Rice | cytosol | 98.06 | 98.06 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 94.57 | 94.21 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 94.57 | 94.21 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 94.57 | 94.21 |
| GSMUA_Achr10P... | Banana | cytosol | 93.02 | 89.89 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 89.92 | 89.58 |
| KRH24214 | Soybean | nucleus | 89.15 | 88.8 |
| KRH69083 | Soybean | nucleus | 88.37 | 87.69 |
| KRH31699 | Soybean | cytosol, nucleus | 88.37 | 87.69 |
| GSMUA_Achr11P... | Banana | cytosol | 93.8 | 87.36 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 94.96 | 86.27 |
| Bra004442.1-P | Field mustard | cytosol | 84.88 | 85.55 |
| Bra014387.1-P | Field mustard | cytosol | 84.88 | 85.55 |
| AT2G47610.1 | Thale cress | cytosol | 84.11 | 84.44 |
| AT3G62870.1 | Thale cress | cytosol | 83.72 | 84.38 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 92.64 | 83.28 |
| CDX93955 | Canola | cytosol | 84.11 | 82.51 |
| CDX89154 | Canola | cytosol | 84.88 | 81.72 |
| CDY55535 | Canola | extracellular | 29.46 | 80.0 |
| Bra000455.1-P | Field mustard | cytosol | 84.11 | 79.78 |
| CDX83325 | Canola | cytosol | 84.11 | 79.78 |
| CDY66035 | Canola | cytosol | 80.23 | 79.62 |
| KRH15988 | Soybean | cytosol | 24.03 | 79.49 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 78.29 | 79.22 |
| CDX80121 | Canola | cytosol | 80.23 | 78.71 |
| Solyc01g097760.2.1 | Tomato | nucleus | 78.68 | 78.68 |
| PGSC0003DMT400057989 | Potato | cytosol | 78.68 | 78.68 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 78.68 | 78.68 |
| Solyc06g064470.2.1 | Tomato | nucleus | 78.29 | 78.29 |
| Solyc06g050120.2.1 | Tomato | nucleus | 77.91 | 77.61 |
| CDX95727 | Canola | cytosol | 83.72 | 77.42 |
| VIT_17s0000g00980.t01 | Wine grape | cytosol | 89.53 | 77.0 |
| CDX76668 | Canola | extracellular | 84.11 | 76.95 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 98.45 | 76.74 |
| VIT_14s0068g01640.t01 | Wine grape | mitochondrion | 89.15 | 76.67 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 89.15 | 76.41 |
| CDY11453 | Canola | cytosol | 84.5 | 73.15 |
| PGSC0003DMT400083237 | Potato | cytosol | 70.54 | 73.09 |
| Solyc10g018810.1.1 | Tomato | cytosol | 21.71 | 72.73 |
| PGSC0003DMT400015879 | Potato | cytosol | 41.09 | 72.11 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 93.41 | 69.45 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 94.19 | 63.95 |
| CDX92144 | Canola | extracellular | 79.07 | 62.96 |
| CDY03061 | Canola | extracellular | 25.19 | 60.75 |
| Solyc01g020290.1.1 | Tomato | cytosol | 12.4 | 59.26 |
| Solyc11g042870.1.1 | Tomato | cytosol | 19.77 | 57.95 |
| CDY25121 | Canola | cytosol | 82.56 | 55.04 |
| CDY34328 | Canola | nucleus | 85.27 | 54.46 |
| Bra013849.1-P | Field mustard | cytosol | 84.88 | 54.21 |
| CDY03403 | Canola | cytosol | 84.5 | 53.3 |
| Bra003512.1-P | Field mustard | cytosol | 77.52 | 49.38 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 20.16 | 48.6 |
| CDX92662 | Canola | cytosol | 77.91 | 48.55 |
| Bra019201.1-P | Field mustard | cytosol | 79.07 | 48.46 |
| CDY11043 | Canola | cytosol | 79.07 | 48.46 |
| CDX67906 | Canola | extracellular | 81.4 | 47.4 |
| CDY33717 | Canola | cytosol | 32.95 | 42.71 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 21.71 | 38.1 |
| CDY55536 | Canola | cytosol | 10.08 | 25.0 |
| CDX93958 | Canola | cytosol | 10.08 | 25.0 |
| CDX89151 | Canola | cytosol | 10.08 | 24.76 |
| CDY25120 | Canola | cytosol | 7.36 | 15.2 |
Protein Annotations
| EntrezGene:100280746 | MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | UniProt:B4FPB7 | EMBL:BT038955 | ncoils:Coil |
| EMBL:EU953519 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0008150 | GO:GO:0030529 | GO:GO:0042254 | GO:GO:1990904 | InterPro:IPR029064 | InterPro:IPR038524 |
| InterPro:L30e-like | ProteinID:ONM22789.1 | PFAM:PF01248 | PRINTS:PR00881 | PRINTS:PR00882 | ScanProsite:PS01082 |
| PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 |
| InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | UniParc:UPI00017B7D6C | EnsemblPlantsGene:Zm00001d006100 | EnsemblPlants:Zm00001d006100_P001 | EnsemblPlants:Zm00001d006100_T001 |
| SEG:seg | : | : | : | : | : |
Description
60S ribosomal protein L7a-1
Coordinates
chr2:-:198157322..198159769
Molecular Weight (calculated)
29391.7 Da
IEP (calculated)
11.088
GRAVY (calculated)
-0.550
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRGGRAP VPAKKKTDKV TNPLFEKRPK QFGIGGALPP KKDLHRFVKW PKVVRIQRQR RILKQRLKVP PALNQFTRTL DKNLATNLFK MLLKYRPEDK
101: AAKKERLLKR AQAENEGKTV ESKKPIVVKY GLNHVTYLIE QNKAQLVVIA HDVDPIELVV WLPALCRKME VPYCIVKGKA RLGSIVHKKT ASVLCLTTVK
201: NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGIMGSKSQA KTKAREKLLA KEAAQRMT
101: AAKKERLLKR AQAENEGKTV ESKKPIVVKY GLNHVTYLIE QNKAQLVVIA HDVDPIELVV WLPALCRKME VPYCIVKGKA RLGSIVHKKT ASVLCLTTVK
201: NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGIMGSKSQA KTKAREKLLA KEAAQRMT
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.