Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 2
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P33210_001 | |
| GSMUA_Achr7P00390_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | GSMUA_Achr4P33210_001 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | GSMUA_Achr7P00390_001 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0326400-01 | Rice | cytosol | 83.97 | 93.41 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 83.97 | 93.41 |
| EER99158 | Sorghum | cytosol | 83.28 | 92.64 |
| Zm00001d006100_P001 | Maize | plasma membrane | 83.28 | 92.64 |
| GSMUA_Achr10P... | Banana | cytosol | 86.06 | 92.51 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 82.93 | 92.25 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 82.93 | 92.25 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 82.93 | 92.25 |
| Zm00001d031640_P001 | Maize | mitochondrion | 82.58 | 92.22 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 82.93 | 91.89 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 82.93 | 91.89 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 82.93 | 91.89 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 82.58 | 91.86 |
| Os01t0924800-00 | Rice | cytosol, golgi | 49.83 | 90.51 |
| GSMUA_Achr11P... | Banana | cytosol | 85.71 | 88.81 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 82.93 | 88.15 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 79.44 | 88.03 |
| KRH24214 | Soybean | nucleus | 79.44 | 88.03 |
| KRH69083 | Soybean | nucleus | 78.05 | 86.15 |
| KRH31699 | Soybean | cytosol, nucleus | 78.05 | 86.15 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 83.62 | 84.51 |
| KRH15988 | Soybean | cytosol | 22.3 | 82.05 |
| AT2G47610.1 | Thale cress | cytosol | 73.17 | 81.71 |
| AT3G62870.1 | Thale cress | cytosol | 72.82 | 81.64 |
| Bra004442.1-P | Field mustard | cytosol | 72.82 | 81.64 |
| Bra014387.1-P | Field mustard | cytosol | 72.13 | 80.86 |
| CDX93955 | Canola | cytosol | 72.82 | 79.47 |
| VIT_17s0000g00980.t01 | Wine grape | cytosol | 81.18 | 77.67 |
| CDX89154 | Canola | cytosol | 72.47 | 77.61 |
| VIT_14s0068g01640.t01 | Wine grape | mitochondrion | 80.49 | 77.0 |
| CDX83325 | Canola | cytosol | 72.82 | 76.84 |
| Bra000455.1-P | Field mustard | cytosol | 72.82 | 76.84 |
| CDY66035 | Canola | cytosol | 68.99 | 76.15 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 79.79 | 76.08 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 67.6 | 76.08 |
| CDY55535 | Canola | extracellular | 25.09 | 75.79 |
| CDX80121 | Canola | cytosol | 69.34 | 75.67 |
| Solyc01g097760.2.1 | Tomato | nucleus | 67.94 | 75.58 |
| PGSC0003DMT400057989 | Potato | cytosol | 67.94 | 75.58 |
| CDX95727 | Canola | cytosol | 73.17 | 75.27 |
| Solyc06g064470.2.1 | Tomato | nucleus | 67.6 | 75.19 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 67.6 | 75.19 |
| Solyc06g050120.2.1 | Tomato | nucleus | 67.6 | 74.9 |
| CDX76668 | Canola | extracellular | 73.17 | 74.47 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 84.32 | 73.11 |
| PGSC0003DMT400083237 | Potato | cytosol | 62.02 | 71.49 |
| CDY11453 | Canola | cytosol | 73.87 | 71.14 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 85.71 | 70.89 |
| PGSC0003DMT400015879 | Potato | cytosol | 36.24 | 70.75 |
| EES03046 | Sorghum | cytosol | 16.38 | 69.12 |
| KXG25835 | Sorghum | cytosol | 16.03 | 67.65 |
| Solyc10g018810.1.1 | Tomato | cytosol | 17.77 | 66.23 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 87.11 | 65.79 |
| CDX92144 | Canola | extracellular | 69.69 | 61.73 |
| Solyc01g020290.1.1 | Tomato | cytosol | 11.15 | 59.26 |
| CDY03061 | Canola | extracellular | 21.25 | 57.01 |
| Solyc11g042870.1.1 | Tomato | cytosol | 16.72 | 54.55 |
| CDY25121 | Canola | cytosol | 72.13 | 53.49 |
| Bra013849.1-P | Field mustard | cytosol | 74.56 | 52.97 |
| CDY34328 | Canola | nucleus | 73.87 | 52.48 |
| CDY03403 | Canola | cytosol | 73.87 | 51.83 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 19.16 | 51.4 |
| CDX92662 | Canola | cytosol | 70.03 | 48.55 |
| Bra019201.1-P | Field mustard | cytosol | 69.69 | 47.51 |
| CDY11043 | Canola | cytosol | 69.69 | 47.51 |
| Bra003512.1-P | Field mustard | cytosol | 66.9 | 47.41 |
| CDX67906 | Canola | extracellular | 70.73 | 45.82 |
| CDY33717 | Canola | cytosol | 29.97 | 43.22 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 19.51 | 38.1 |
| CDX93958 | Canola | cytosol | 8.36 | 23.08 |
| CDY55536 | Canola | cytosol | 8.36 | 23.08 |
| CDX89151 | Canola | cytosol | 8.36 | 22.86 |
| CDY25120 | Canola | cytosol | 6.27 | 14.4 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0030529 | GO:GO:0042254 | GO:GO:1990904 | EnsemblPlantsGene:GSMUA_Achr3G03600_001 | EnsemblPlants:GSMUA_Achr3P03600_001 |
| EnsemblPlants:GSMUA_Achr3T03600_001 | InterPro:IPR029064 | InterPro:IPR038524 | InterPro:L30e-like | UniProt:M0SBH8 | PFAM:PF01248 |
| PRINTS:PR00881 | PRINTS:PR00882 | ScanProsite:PS01082 | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 |
| InterPro:Ribosomal_L7A/L8_sf | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | UniParc:UPI000295CE4F |
| SEG:seg | : | : | : | : | : |
Description
60S ribosomal protein L7a [Source:GMGC_GENE;Acc:GSMUA_Achr3G03600_001]
Coordinates
chr3:-:2339911..2346406
Molecular Weight (calculated)
32746.1 Da
IEP (calculated)
10.972
GRAVY (calculated)
-0.319
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMICINFC GVAELPSHEL FSSFLILFHL GPKRGGKAPV PAKKKPEKVV NPLFEKRPKQ FGIGGALPPK RDLHRFVKWP KVVRIQRQRR ILKQRLKVPP
101: ALHQFTRTLD KNLATNLFKM LLKYRPEDRA AKKERLLKRA QAEAEGKTVE VKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEI
201: PYCIVKGKAR LGAIVHKKTA SVLCLTTVKN EDKLEFSKIL EAIKANFNDK FDEIRRKWGG GVMGSKSQAK SKSREKLLAK EAAQRMS
101: ALHQFTRTLD KNLATNLFKM LLKYRPEDRA AKKERLLKRA QAEAEGKTVE VKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEI
201: PYCIVKGKAR LGAIVHKKTA SVLCLTTVKN EDKLEFSKIL EAIKANFNDK FDEIRRKWGG GVMGSKSQAK SKSREKLLAK EAAQRMS
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.