Factsheet for Bra003512.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004442.1-P	Field mustard	cytosol	56.3	89.06
Bra014387.1-P	Field mustard	cytosol	55.8	88.28
AT3G62870.1	Thale cress	cytosol	54.07	85.55
Bra000455.1-P	Field mustard	cytosol	54.32	80.88
Os01t0924800-00	Rice	cytosol, golgi	30.37	77.85
KRH29218	Soybean	endoplasmic reticulum, nucleus	49.63	77.61
Zm00001d006100_P001	Maize	plasma membrane	49.38	77.52
KRH69083	Soybean	nucleus	49.63	77.31
KRH31699	Soybean	cytosol, nucleus	49.63	77.31
KRH24214	Soybean	nucleus	49.38	77.22
Os08t0326400-01	Rice	cytosol	49.14	77.13
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	49.14	77.13
Os09t0507800-01	Rice	nucleus, plasma membrane	49.14	77.13
Zm00001d031640_P001	Maize	mitochondrion	48.89	77.04
EER99158	Sorghum	cytosol	48.89	76.74
TraesCS7D01G262800.2	Wheat	cytosol	48.89	76.74
TraesCS7A01G261600.1	Wheat	cytosol, plastid	48.89	76.74
TraesCS7B01G159700.1	Wheat	cytosol	48.64	76.36
TraesCS5B01G287900.1	Wheat	cytosol	48.4	75.68
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	48.4	75.68
TraesCS5D01G296200.1	Wheat	cytosol	48.4	75.68
CDX67906	Canola	extracellular	81.73	74.72
GSMUA_Achr10P...	Banana	cytosol	48.4	73.41
HORVU7Hr1G054670.5	Barley	cytosol	48.89	73.33
Solyc10g018810.1.1	Tomato	cytosol	13.83	72.73
PGSC0003DMT400057989	Potato	cytosol	44.94	70.54
GSMUA_Achr11P...	Banana	cytosol	48.15	70.4
PGSC0003DMT400008912	Potato	cytosol, plastid	44.2	70.2
Solyc01g097760.2.1	Tomato	nucleus	44.69	70.16
Solyc06g064470.2.1	Tomato	nucleus	44.44	69.77
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	44.44	69.77
HORVU5Hr1G076700.2	Barley	cytosol	48.64	69.37
Solyc06g050120.2.1	Tomato	nucleus	44.2	69.11
GSMUA_Achr3P03600_001	Banana	cytosol	47.41	66.9
PGSC0003DMT400083237	Potato	cytosol	40.74	66.27
VIT_14s0083g00970.t01	Wine grape	plastid	48.89	65.78
KRH15988	Soybean	cytosol	12.1	62.82
PGSC0003DMT400015879	Potato	cytosol	22.72	62.59
KXG35979	Sorghum	cytosol, mitochondrion	48.89	59.82
GSMUA_Achr6P21550_001	Banana	cytosol	47.65	55.62
Bra013849.1-P	Field mustard	cytosol	53.83	53.96
EES03046	Sorghum	cytosol	8.89	52.94
KXG25835	Sorghum	cytosol	8.89	52.94
Solyc11g042870.1.1	Tomato	cytosol	11.36	52.27
Solyc01g020290.1.1	Tomato	cytosol	6.91	51.85
GSMUA_Achr6P14640_001	Banana	cytosol	48.64	51.84
Bra019201.1-P	Field mustard	cytosol	50.62	48.69
TraesCS4D01G148500.2	Wheat	cytosol	10.86	29.93

Protein Annotations

MapMan:16.4.2.3	MapMan:17.1.2.1.6	Gene3D:2.30.30.100	Gene3D:3.30.1330.210	EnsemblPlantsGene:Bra003512	EnsemblPlants:Bra003512.1
EnsemblPlants:Bra003512.1-P	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030529	GO:GO:0030532
GO:GO:0042254	GO:GO:1990904	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	UniProt:M4CH29	PFAM:PF01248	PFAM:PF01423	PRINTS:PR00881	PRINTS:PR00882
ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SMART:SM00651	SUPFAM:SSF50182	SUPFAM:SSF55315	InterPro:Sm_D2
UniParc:UPI0002541952	SEG:seg	:	:	:	:

Description

AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA)

Coordinates

chrA07:-:13532745..13535367

Molecular Weight (calculated)

46853.0 Da

IEP (calculated)

10.629

GRAVY (calculated)

-0.492

Length

405 amino acids

Sequence
(BLAST)

001: MEKVTNPLFE RRPKQFGIGG ALPPKKDLTR YIKWPKSIRL QRQKRILKQR LKVPPALNQF TKTLDKNLAT QLFKVLMKYR PEDKAAKKDR LLKKAQAEAE
101: GKPSESKKPI VVKYGLNHVT YLIEQNKAQL VVIAHDVDPI ELVVWLPALC RKMEVPYCIV KGKSRLGTVV HQKTAACLCL TTVKNEDKLE FSKILEAIKA
201: NFNDKYEEYR KKWGGGIMGS KSQAKTKAKE RCKRSSFRYG FMIGTCFVKF MLRTKRDGVS RKEELEQLIV FFLFPEKYLE NRDRDLAAKT PNCFDLLIVL
301: LIPSEHEGKT EEEEFNTGPL SVLMMSVKNN TQVLINCRNN RKLLGHVRAF DRHCNMVLEN VREMWTEVPK TGKGKKKALP VNRDRFISKM FLRGDSVIIV
401: LRNPK

Best Arabidopsis Sequence Match ( AT3G62840.1 )
(BLAST)

001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.