Factsheet for Os01t0924800-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
YLoc:	cytosol

golgi: 25047511

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0107500-00
Os07t0499800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	Os03t0107500-00	AT1G30860.1	21798944
AT2G47610.1	Os07t0499800-01	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55535	Canola	extracellular	45.57	75.79
Solyc10g018810.1.1	Tomato	cytosol	34.81	71.43
Solyc01g020290.1.1	Tomato	cytosol	20.25	59.26
CDY03061	Canola	extracellular	39.87	58.88
Os08t0326400-01	Rice	cytosol	94.94	58.14
Os09t0507800-01	Rice	nucleus, plasma membrane	94.94	58.14
KRH29218	Soybean	endoplasmic reticulum, nucleus	90.51	55.21
KRH24214	Soybean	nucleus	89.87	54.83
KRH69083	Soybean	nucleus	89.24	54.23
KRH31699	Soybean	cytosol, nucleus	89.24	54.23
GSMUA_Achr10P...	Banana	cytosol	90.51	53.56
GSMUA_Achr11P...	Banana	cytosol	91.77	52.35
Solyc11g042870.1.1	Tomato	cytosol	28.48	51.14
Bra014387.1-P	Field mustard	cytosol	82.28	50.78
Bra004442.1-P	Field mustard	cytosol	82.28	50.78
AT2G47610.1	Thale cress	cytosol	82.28	50.58
AT3G62870.1	Thale cress	cytosol	81.65	50.39
KRH15988	Soybean	cytosol	24.68	50.0
CDY66035	Canola	cytosol	82.28	50.0
GSMUA_Achr3P03600_001	Banana	cytosol	90.51	49.83
CDX80121	Canola	cytosol	82.28	49.43
CDX93955	Canola	cytosol	81.65	49.05
CDX89154	Canola	cytosol	82.28	48.51
Solyc01g097760.2.1	Tomato	nucleus	78.48	48.06
PGSC0003DMT400008912	Potato	cytosol, plastid	77.22	47.84
VIT_14s0068g01640.t01	Wine grape	mitochondrion	89.87	47.33
PGSC0003DMT400057989	Potato	cytosol	77.22	47.29
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	77.22	47.29
Solyc06g064470.2.1	Tomato	nucleus	77.22	47.29
CDX83325	Canola	cytosol	81.01	47.06
Bra000455.1-P	Field mustard	cytosol	81.01	47.06
VIT_17s0000g00980.t01	Wine grape	cytosol	89.24	47.0
Solyc06g050120.2.1	Tomato	nucleus	76.58	46.72
CDX76668	Canola	extracellular	82.28	46.1
CDX95727	Canola	cytosol	81.01	45.88
VIT_14s0083g00970.t01	Wine grape	plastid	84.18	44.19
CDY11453	Canola	cytosol	82.28	43.62
GSMUA_Achr6P21550_001	Banana	cytosol	90.51	41.21
PGSC0003DMT400083237	Potato	cytosol	63.92	40.56
GSMUA_Achr6P14640_001	Banana	cytosol	91.77	38.16
CDX92144	Canola	extracellular	73.42	35.8
Bra013849.1-P	Field mustard	cytosol	84.81	33.17
CDY34328	Canola	nucleus	84.18	32.92
CDY03403	Canola	cytosol	83.54	32.27
CDY25121	Canola	cytosol	78.48	32.04
Bra003512.1-P	Field mustard	cytosol	77.85	30.37
CDX92662	Canola	cytosol	76.58	29.23
Bra019201.1-P	Field mustard	cytosol	77.85	29.22
CDY11043	Canola	cytosol	77.85	29.22
CDX67906	Canola	extracellular	77.22	27.54
CDY33717	Canola	cytosol	34.18	27.14
PGSC0003DMT400015879	Potato	cytosol	20.89	22.45
CDY55536	Canola	cytosol	9.49	14.42
CDX93958	Canola	cytosol	9.49	14.42
CDX89151	Canola	cytosol	9.49	14.29
CDY25120	Canola	cytosol	1.9	2.4
CDY08962	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	UniProt:A0A0P0VCB2	ProteinID:BAS75976.1	GO:GO:0005575	GO:GO:0008150
GO:GO:0042254	GO:GO:1990904	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	EnsemblPlantsGene:Os01g0924800
EnsemblPlants:Os01t0924800-00	PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105
PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS
SUPFAM:SSF55315	UniParc:UPI0003938D90	SEG:seg	:	:	:

Description

Similar to 60S ribosomal protein l7a (Fragment). (Os01t0924800-00)

Coordinates

chr1:-:40496253..40498071

Molecular Weight (calculated)

17691.9 Da

IEP (calculated)

10.252

GRAVY (calculated)

-0.297

Length

158 amino acids

Sequence
(BLAST)

001: GCQKERLLKR AQAEAEGKTV EAKKPIVVKY GLDHVTYLIE QSKAQLVVIA HDVDPIELVV WLPALCRKME IPYCIVKGKA RLGSIVHKKT ASVLCLTTVK
101: NEDKLEFSKI LEAIKSNFND KFDEVRKKWG GGIMGSKSQA KTKAREKLLA KEAAQRMT

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.