CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55535	Canola	extracellular	21.27	91.58
CDX93955	Canola	cytosol	57.95	90.11
CDX89154	Canola	cytosol	58.68	89.55
CDX83325	Canola	cytosol	59.17	88.97
CDY66035	Canola	cytosol	56.23	88.46
CDX80121	Canola	cytosol	56.23	87.45
Bra013849.1-P	Field mustard	cytosol	85.82	86.88
CDX76668	Canola	extracellular	59.41	86.17
CDY34328	Canola	nucleus	85.09	86.14
CDX95727	Canola	cytosol	58.68	86.02
Zm00001d006100_P001	Maize	plasma membrane	53.3	84.5
TraesCS7A01G261600.1	Wheat	cytosol, plastid	53.06	84.11
TraesCS7D01G262800.2	Wheat	cytosol	53.06	84.11
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	53.06	84.11
Zm00001d031640_P001	Maize	mitochondrion	52.81	84.05
TraesCS7B01G159700.1	Wheat	cytosol	52.81	83.72
EER99158	Sorghum	cytosol	52.81	83.72
Os09t0507800-01	Rice	nucleus, plasma membrane	52.81	83.72
Os08t0326400-01	Rice	cytosol	52.81	83.72
Os01t0924800-00	Rice	cytosol, golgi	32.27	83.54
KRH31699	Soybean	cytosol, nucleus	53.06	83.46
KRH69083	Soybean	nucleus	52.81	83.08
KRH29218	Soybean	endoplasmic reticulum, nucleus	52.57	83.01
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	52.57	83.01
KRH24214	Soybean	nucleus	52.57	83.01
TraesCS5B01G287900.1	Wheat	cytosol	52.57	83.01
TraesCS5D01G296200.1	Wheat	cytosol	52.57	83.01
GSMUA_Achr10P...	Banana	cytosol	52.57	80.52
HORVU7Hr1G054670.5	Barley	cytosol	53.06	80.37
CDY11453	Canola	cytosol	58.44	80.2
GSMUA_Achr11P...	Banana	cytosol	53.06	78.34
HORVU5Hr1G076700.2	Barley	cytosol	53.06	76.41
CDY11043	Canola	cytosol	76.04	73.87
GSMUA_Achr3P03600_001	Banana	cytosol	51.83	73.87
KRH15988	Soybean	cytosol	13.45	70.51
CDY03061	Canola	extracellular	18.09	69.16
CDX92144	Canola	extracellular	54.28	68.52
KXG35979	Sorghum	cytosol, mitochondrion	54.03	66.77
EES03046	Sorghum	cytosol	10.76	64.71
KXG25835	Sorghum	cytosol	10.51	63.24
GSMUA_Achr6P21550_001	Banana	cytosol	52.57	61.96
CDY25121	Canola	cytosol	56.72	59.95
CDY08962	Canola	endoplasmic reticulum, extracellular	15.65	59.81
CDX92662	Canola	cytosol	58.44	57.73
GSMUA_Achr6P14640_001	Banana	cytosol	53.06	57.11
CDX67906	Canola	extracellular	55.26	51.02
CDY33717	Canola	cytosol	20.05	41.21
TraesCS4D01G148500.2	Wheat	cytosol	11.49	31.97
CDY55536	Canola	cytosol	4.65	18.27
CDX93958	Canola	cytosol	4.65	18.27
CDX89151	Canola	cytosol	4.65	18.1
CDY25120	Canola	cytosol	3.42	11.2

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:A0A078EUZ3	EnsemblPlants:CDY03403	ProteinID:CDY03403	ProteinID:CDY03403.1
ncoils:Coil	GO:GO:0005575	GO:GO:0008150	GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00116048001
InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882
ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	TMHMM:TMhelix	UniParc:UPI0004EE1B3F	SEG:seg

Description

BnaC01g16790D

Coordinates

chrLK031943:-:265541..268309

Molecular Weight (calculated)

46953.7 Da

IEP (calculated)

10.421

GRAVY (calculated)

-0.596

Length

409 amino acids

Sequence
(BLAST)

001: MEERHERLNQ QFTELEKEWA AMKTSKGSSA VSRITTEEAL EFVEYSPREL MLSLQHEQAC PEAEMRSPCR RKLFHDSDDD SDNEAKMTPL SHSTCWSSNV
101: MRVGDTNNKK EMKKKNKRGM IVCVVSMVVI LFMSMFLAVL MDGFEFDHRQ INTLAPKKGV KAVTKKKSEK VTNPLFERRP KQFGIGGALP PKKDLTRYIK
201: WPKSIRLQRQ KRILKQRLKI PPALNQFTKT LDKNLATSLF KMMLKYRPED KAAKKERLLK KAQAETEGKT AESKKPIVVK YGLNHVTYLI EQNKAQLVVI
301: AHDVDPIELV VWLPALCRKM EVPYCIVKGK SRLGAIVHQK TAACLCLTTV KNEDKMEFSK ILEAIKANFN DKYEEYRKKW GGGIMGSKSQ AKTKAKERVL
401: AKEAAQRMN

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.