Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G048520.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | HORVU2Hr1G048520.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G262800.2 | Wheat | cytosol | 95.19 | 99.61 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 94.81 | 99.22 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 94.44 | 98.84 |
| Zm00001d031640_P001 | Maize | mitochondrion | 90.0 | 94.55 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 94.07 | 89.44 |
| GSMUA_Achr10P... | Banana | cytosol | 86.3 | 87.27 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 83.7 | 87.26 |
| KRH24214 | Soybean | nucleus | 83.7 | 87.26 |
| KRH69083 | Soybean | nucleus | 82.96 | 86.15 |
| KRH31699 | Soybean | cytosol, nucleus | 82.96 | 86.15 |
| GSMUA_Achr11P... | Banana | cytosol | 87.41 | 85.2 |
| Bra004442.1-P | Field mustard | cytosol | 80.74 | 85.16 |
| AT2G47610.1 | Thale cress | cytosol | 80.74 | 84.82 |
| AT3G62870.1 | Thale cress | cytosol | 80.37 | 84.77 |
| Bra014387.1-P | Field mustard | cytosol | 80.0 | 84.38 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 88.15 | 82.93 |
| CDX93955 | Canola | cytosol | 80.37 | 82.51 |
| CDY55535 | Canola | extracellular | 28.52 | 81.05 |
| CDX89154 | Canola | cytosol | 80.0 | 80.6 |
| CDY66035 | Canola | cytosol | 77.04 | 80.0 |
| KRH15988 | Soybean | cytosol | 22.96 | 79.49 |
| CDX80121 | Canola | cytosol | 77.04 | 79.09 |
| Bra000455.1-P | Field mustard | cytosol | 79.63 | 79.04 |
| CDX83325 | Canola | cytosol | 79.63 | 79.04 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 73.7 | 78.04 |
| PGSC0003DMT400057989 | Potato | cytosol | 73.7 | 77.13 |
| Solyc01g097760.2.1 | Tomato | nucleus | 73.7 | 77.13 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 73.7 | 77.13 |
| CDX76668 | Canola | extracellular | 80.37 | 76.95 |
| Solyc06g064470.2.1 | Tomato | nucleus | 73.33 | 76.74 |
| CDX95727 | Canola | cytosol | 79.26 | 76.7 |
| Solyc06g050120.2.1 | Tomato | nucleus | 73.33 | 76.45 |
| VIT_14s0068g01640.t01 | Wine grape | mitochondrion | 84.81 | 76.33 |
| VIT_17s0000g00980.t01 | Wine grape | cytosol | 84.07 | 75.67 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 84.07 | 75.42 |
| CDY11453 | Canola | cytosol | 80.74 | 73.15 |
| PGSC0003DMT400083237 | Potato | cytosol | 66.67 | 72.29 |
| PGSC0003DMT400015879 | Potato | cytosol | 38.52 | 70.75 |
| EES03046 | Sorghum | cytosol | 17.78 | 70.59 |
| Solyc10g018810.1.1 | Tomato | cytosol | 20.0 | 70.13 |
| KXG25835 | Sorghum | cytosol | 17.41 | 69.12 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 87.41 | 68.01 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 88.52 | 62.89 |
| CDX92144 | Canola | extracellular | 75.19 | 62.65 |
| CDY03061 | Canola | extracellular | 24.07 | 60.75 |
| Solyc01g020290.1.1 | Tomato | cytosol | 11.85 | 59.26 |
| Solyc11g042870.1.1 | Tomato | cytosol | 18.52 | 56.82 |
| CDY25121 | Canola | cytosol | 78.89 | 55.04 |
| Bra013849.1-P | Field mustard | cytosol | 80.74 | 53.96 |
| CDY34328 | Canola | nucleus | 80.74 | 53.96 |
| CDY03403 | Canola | cytosol | 80.37 | 53.06 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 20.0 | 50.47 |
| CDX92662 | Canola | cytosol | 75.56 | 49.28 |
| Bra003512.1-P | Field mustard | cytosol | 73.33 | 48.89 |
| CDY11043 | Canola | cytosol | 75.93 | 48.69 |
| Bra019201.1-P | Field mustard | cytosol | 75.93 | 48.69 |
| CDX67906 | Canola | extracellular | 77.41 | 47.18 |
| CDY33717 | Canola | cytosol | 30.74 | 41.71 |
| CDY55536 | Canola | cytosol | 9.63 | 25.0 |
| CDX93958 | Canola | cytosol | 9.63 | 25.0 |
| CDX89151 | Canola | cytosol | 9.63 | 24.76 |
| CDY25120 | Canola | cytosol | 6.67 | 14.4 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | UniProt:A0A287WJX9 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0042254 | GO:GO:1990904 | EnsemblPlantsGene:HORVU7Hr1G054670 | EnsemblPlants:HORVU7Hr1G054670.5 | InterPro:IPR029064 | InterPro:IPR038524 |
| InterPro:L30e-like | PFAM:PF01248 | PRINTS:PR00881 | PRINTS:PR00882 | ScanProsite:PS01082 | PANTHER:PTHR23105 |
| PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | InterPro:Ribosomal_L7Ae_CS |
| SUPFAM:SSF55315 | UniParc:UPI000B46B269 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:221347574..221350121
Molecular Weight (calculated)
30732.3 Da
IEP (calculated)
11.060
GRAVY (calculated)
-0.556
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: RCPADLNQPP AKWAPKRGGK APVPAKKKTE KVTNPLFEKR PKQFGIGGAL PPKKDLHRFV KWPKVVRIQR QRRILKQRLK VPPALHQFTR TLDKNLATNL
101: FKMLLKYRPE DKVAKKERLL KRAQAEAEGK TVEAKKPIVV KYGLNHVTYL IEQSKAQLVV IAHDVDPIEL VVWLPALCRK MEVPYCIVKG KSRLGSIVHK
201: KTASVLCLTT VKNEDKLEFS KILEAIKANF NDKFDEVRKK WGGGVMGSKS QAKTKARERL IAKEAAQRMN
101: FKMLLKYRPE DKVAKKERLL KRAQAEAEGK TVEAKKPIVV KYGLNHVTYL IEQSKAQLVV IAHDVDPIEL VVWLPALCRK MEVPYCIVKG KSRLGSIVHK
201: KTASVLCLTT VKNEDKLEFS KILEAIKANF NDKFDEVRKK WGGGVMGSKS QAKTKARERL IAKEAAQRMN
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.