Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0924800-00 | Rice | cytosol, golgi | 27.14 | 34.18 |
| CDX93955 | Canola | cytosol | 44.72 | 33.84 |
| CDX89154 | Canola | cytosol | 45.23 | 33.58 |
| KRH24214 | Soybean | nucleus | 43.22 | 33.2 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 43.22 | 33.2 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 42.71 | 32.95 |
| Zm00001d006100_P001 | Maize | plasma membrane | 42.71 | 32.95 |
| Os08t0326400-01 | Rice | cytosol | 42.71 | 32.95 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 42.71 | 32.95 |
| AT3G62870.1 | Thale cress | cytosol | 42.21 | 32.81 |
| Zm00001d031640_P001 | Maize | mitochondrion | 42.21 | 32.68 |
| GSMUA_Achr10P... | Banana | cytosol | 43.22 | 32.21 |
| EER99158 | Sorghum | cytosol | 41.71 | 32.17 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 41.71 | 32.17 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 41.71 | 32.17 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 41.71 | 32.17 |
| KRH69083 | Soybean | nucleus | 41.71 | 31.92 |
| KRH31699 | Soybean | cytosol, nucleus | 41.71 | 31.92 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 41.21 | 31.66 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 41.21 | 31.66 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 41.21 | 31.66 |
| CDX76668 | Canola | extracellular | 44.72 | 31.56 |
| CDX83325 | Canola | cytosol | 42.71 | 31.25 |
| GSMUA_Achr11P... | Banana | cytosol | 43.22 | 31.05 |
| CDX95727 | Canola | cytosol | 43.22 | 30.82 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 41.71 | 30.74 |
| CDY66035 | Canola | cytosol | 39.7 | 30.38 |
| CDY11453 | Canola | cytosol | 45.23 | 30.2 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 43.22 | 29.97 |
| CDX80121 | Canola | cytosol | 39.2 | 29.66 |
| KRH15988 | Soybean | cytosol | 11.56 | 29.49 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 41.71 | 29.23 |
| CDX92144 | Canola | extracellular | 44.22 | 27.16 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 41.71 | 25.08 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 42.71 | 24.5 |
| CDY25121 | Canola | cytosol | 45.23 | 23.26 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 42.21 | 22.11 |
| CDX92662 | Canola | cytosol | 43.22 | 20.77 |
| CDY11043 | Canola | cytosol | 43.72 | 20.67 |
| CDY34328 | Canola | nucleus | 41.21 | 20.3 |
| CDX67906 | Canola | extracellular | 44.72 | 20.09 |
| CDY03403 | Canola | cytosol | 41.21 | 20.05 |
| CDX93958 | Canola | cytosol | 5.53 | 10.58 |
| CDY55536 | Canola | cytosol | 5.53 | 10.58 |
| CDX89151 | Canola | cytosol | 5.53 | 10.48 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 4.02 | 7.48 |
| EES03046 | Sorghum | cytosol | 2.51 | 7.35 |
| KXG25835 | Sorghum | cytosol | 2.51 | 7.35 |
| CDY03061 | Canola | extracellular | 3.02 | 5.61 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 4.02 | 5.44 |
| CDY55535 | Canola | extracellular | 2.51 | 5.26 |
| CDY25120 | Canola | cytosol | 2.51 | 4.0 |
Protein Annotations
| EnsemblPlants:CDY33717 | EnsemblPlantsGene:GSBRNA2T00055123001 | Gene3D:3.30.1330.210 | InterPro:IPR029064 | InterPro:IPR038524 | InterPro:L30e-like |
| InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 |
| PFAM:PF01248 | PRINTS:PR00881 | PRINTS:PR00882 | ProteinID:CDY33717 | ProteinID:CDY33717.1 | SEG:seg |
| SUPFAM:SSF55315 | UniParc:UPI0004EF4812 | UniProt:A0A078H878 | MapMan:17.1.2.1.6 | : | : |
Description
BnaC04g29340DBnaC04g29340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H878]
Coordinates
chrLK032320:-:429663..431131
Molecular Weight (calculated)
22265.1 Da
IEP (calculated)
10.027
GRAVY (calculated)
-0.196
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVTFKISKT GQLNPKSIDL SEKSKAIVES SAGDASGFLQ SSLLHVSPDY EFSFVLSLYL NGYSIGKPSE AVKQTSFRDA PKTLDKNIAT QLFKVLMKYR
101: PEDKAAKKDR LLKKAQAEAE GKPSESKKPI VVKYGLNHMT YLSEQNKAQI VVIAHDVDPI ELVVWFLHFA ERWKCLTALS KANLVLERSF TRRLLLACV
101: PEDKAAKKDR LLKKAQAEAE GKPSESKKPI VVKYGLNHMT YLSEQNKAQI VVIAHDVDPI ELVVWFLHFA ERWKCLTALS KANLVLERSF TRRLLLACV
001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
Arabidopsis Description
RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.