Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93958 | Canola | cytosol | 21.6 | 25.96 |
| CDY55536 | Canola | cytosol | 21.6 | 25.96 |
| CDX89151 | Canola | cytosol | 20.0 | 23.81 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 16.0 | 7.75 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 8.8 | 7.48 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 15.2 | 7.36 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 15.2 | 7.36 |
| Zm00001d006100_P001 | Maize | plasma membrane | 15.2 | 7.36 |
| EER99158 | Sorghum | cytosol | 15.2 | 7.36 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 15.2 | 7.36 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 15.2 | 7.34 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 15.2 | 7.34 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 15.2 | 7.34 |
| Zm00001d031640_P001 | Maize | mitochondrion | 14.4 | 7.0 |
| Os08t0326400-01 | Rice | cytosol | 14.4 | 6.98 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 14.4 | 6.98 |
| GSMUA_Achr10P... | Banana | cytosol | 14.4 | 6.74 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 15.2 | 6.69 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 14.4 | 6.67 |
| GSMUA_Achr11P... | Banana | cytosol | 14.4 | 6.5 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 15.2 | 6.31 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 14.4 | 6.27 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 12.8 | 6.18 |
| KRH24214 | Soybean | nucleus | 12.8 | 6.18 |
| KRH69083 | Soybean | nucleus | 12.8 | 6.15 |
| KRH31699 | Soybean | cytosol, nucleus | 12.8 | 6.15 |
| PGSC0003DMT400015879 | Potato | cytosol | 7.2 | 6.12 |
| Solyc06g050120.2.1 | Tomato | nucleus | 12.0 | 5.79 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 15.2 | 5.74 |
| Solyc11g042870.1.1 | Tomato | cytosol | 4.0 | 5.68 |
| CDY03061 | Canola | extracellular | 4.8 | 5.61 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 4.8 | 5.61 |
| Solyc01g020290.1.1 | Tomato | cytosol | 2.4 | 5.56 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 11.2 | 5.49 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 15.2 | 5.48 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 11.2 | 5.43 |
| Solyc01g097760.2.1 | Tomato | nucleus | 11.2 | 5.43 |
| Solyc06g064470.2.1 | Tomato | nucleus | 11.2 | 5.43 |
| PGSC0003DMT400057989 | Potato | cytosol | 11.2 | 5.43 |
| CDY55535 | Canola | extracellular | 4.0 | 5.26 |
| PGSC0003DMT400083237 | Potato | cytosol | 10.4 | 5.22 |
| Solyc10g018810.1.1 | Tomato | cytosol | 3.2 | 5.19 |
| CDY66035 | Canola | cytosol | 10.4 | 5.0 |
| CDX80121 | Canola | cytosol | 10.4 | 4.94 |
| CDX89154 | Canola | cytosol | 10.4 | 4.85 |
| CDX83325 | Canola | cytosol | 10.4 | 4.78 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 14.4 | 4.74 |
| CDX95727 | Canola | cytosol | 10.4 | 4.66 |
| CDX76668 | Canola | extracellular | 10.4 | 4.61 |
| CDX93955 | Canola | cytosol | 9.6 | 4.56 |
| KXG25835 | Sorghum | cytosol | 2.4 | 4.41 |
| EES03046 | Sorghum | cytosol | 2.4 | 4.41 |
| CDY11453 | Canola | cytosol | 10.4 | 4.36 |
| CDX92144 | Canola | extracellular | 10.4 | 4.01 |
| CDY34328 | Canola | nucleus | 11.2 | 3.47 |
| CDY03403 | Canola | cytosol | 11.2 | 3.42 |
| CDY25121 | Canola | cytosol | 10.4 | 3.36 |
| CDX92662 | Canola | cytosol | 10.4 | 3.14 |
| CDY11043 | Canola | cytosol | 10.4 | 3.09 |
| CDX67906 | Canola | extracellular | 10.4 | 2.93 |
| KRH15988 | Soybean | cytosol | 1.6 | 2.56 |
| CDY33717 | Canola | cytosol | 4.0 | 2.51 |
| Os01t0924800-00 | Rice | cytosol, golgi | 2.4 | 1.9 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | GO:A0A078GF75 | UniProt:A0A078GF75 | EnsemblPlants:CDY25120 | ProteinID:CDY25120 |
| ProteinID:CDY25120.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 | GO:GO:0030532 |
| EnsemblPlantsGene:GSBRNA2T00028994001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PFAM:PF01423 | PANTHER:PTHR12777 | SMART:SM00651 |
| SUPFAM:SSF50182 | InterPro:Sm_D2 | UniParc:UPI0004EF4B91 | SEG:seg | : | : |
Description
BnaC06g18620DBnaC06g18620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF75]
Coordinates
chrLK032168:-:560783..562099
Molecular Weight (calculated)
14425.6 Da
IEP (calculated)
10.038
GRAVY (calculated)
-0.549
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDTNGKTE EEEFNTGPLS VLMMSVKNNT QVLINCRNNR KLLGRVRAFD RHCNMVLENV REMWTEVPKT GKGKKKALPV NRDRFISKMF LRGDSVIIVL
101: RNPKQSYLTE CSSQDWIGIK ISAHL
101: RNPKQSYLTE CSSQDWIGIK ISAHL
001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK
101: IIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.