Factsheet for PGSC0003DMT400057989

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029374
PGSC0003DMT400035458

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT2G47610.1	PGSC0003DMT400035458	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097760.2.1	Tomato	nucleus	97.67	97.67
PGSC0003DMT400008912	Potato	cytosol, plastid	94.96	96.08
PGSC0003DMT400083237	Potato	cytosol	89.15	92.37
PGSC0003DMT400015879	Potato	cytosol	50.39	88.44
AT2G47610.1	Thale cress	cytosol	80.23	80.54
KRH31699	Soybean	cytosol, nucleus	80.62	80.0
AT3G62870.1	Thale cress	cytosol	79.07	79.69
Bra004442.1-P	Field mustard	cytosol	79.07	79.69
Bra014387.1-P	Field mustard	cytosol	79.07	79.69
KRH69083	Soybean	nucleus	80.23	79.62
KRH24214	Soybean	nucleus	79.46	79.15
KRH29218	Soybean	endoplasmic reticulum, nucleus	79.07	78.76
Zm00001d006100_P001	Maize	plasma membrane	78.68	78.68
EER99158	Sorghum	cytosol	78.68	78.68
Zm00001d031640_P001	Maize	mitochondrion	78.29	78.6
Os08t0326400-01	Rice	cytosol	78.29	78.29
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	78.29	78.29
Os09t0507800-01	Rice	nucleus, plasma membrane	78.29	78.29
TraesCS7A01G261600.1	Wheat	cytosol, plastid	77.91	77.91
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	77.91	77.61
TraesCS5B01G287900.1	Wheat	cytosol	77.91	77.61
TraesCS5D01G296200.1	Wheat	cytosol	77.91	77.61
TraesCS7D01G262800.2	Wheat	cytosol	77.52	77.52
Os01t0924800-00	Rice	cytosol, golgi	47.29	77.22
TraesCS7B01G159700.1	Wheat	cytosol	77.13	77.13
GSMUA_Achr10P...	Banana	cytosol	78.68	76.03
Bra000455.1-P	Field mustard	cytosol	79.84	75.74
HORVU7Hr1G054670.5	Barley	cytosol	77.13	73.7
GSMUA_Achr11P...	Banana	cytosol	77.91	72.56
HORVU5Hr1G076700.2	Barley	cytosol	78.29	71.13
GSMUA_Achr3P03600_001	Banana	cytosol	75.58	67.94
VIT_14s0083g00970.t01	Wine grape	plastid	78.68	67.44
KRH15988	Soybean	cytosol	19.77	65.38
KXG35979	Sorghum	cytosol, mitochondrion	78.68	61.33
EES03046	Sorghum	cytosol	15.89	60.29
KXG25835	Sorghum	cytosol	15.5	58.82
GSMUA_Achr6P21550_001	Banana	cytosol	76.74	57.06
GSMUA_Achr6P14640_001	Banana	cytosol	78.29	53.16
Bra019201.1-P	Field mustard	cytosol	83.72	51.31
Bra013849.1-P	Field mustard	cytosol	79.84	50.99
Bra003512.1-P	Field mustard	cytosol	70.54	44.94
TraesCS4D01G148500.2	Wheat	cytosol	17.44	30.61
CDX93958	Canola	cytosol	8.53	21.15
CDY55536	Canola	cytosol	8.53	21.15
CDX89151	Canola	cytosol	8.53	20.95
CDY25120	Canola	cytosol	5.43	11.2

Protein Annotations

EntrezGene:102577601	MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	ProteinID:ABB72809	ProteinID:ABB72809.1	ProteinID:ABB87129
ProteinID:ABB87129.1	EMBL:DQ241858	EMBL:DQ268850	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0008150	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904
InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	RefSeq:NP_001275305.1	PFAM:PF01248	EnsemblPlantsGene:PGSC0003DMG400022511
PGSC:PGSC0003DMG400022511	EnsemblPlants:PGSC0003DMT400057989	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105
PANTHER:PTHR23105:SF70	UniProt:Q2XPW4	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2
InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI00005EDD75	SEG:seg	:	:

Description

60S ribosomal protein L7A [Source:PGSC_GENE;Acc:PGSC0003DMG400022511]

Coordinates

chr1:+:75427259..75429554

Molecular Weight (calculated)

29296.6 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.563

Length

258 amino acids

Sequence
(BLAST)

001: MAPKKGVAVA AKKKPEKAKV VNPLFEKRPK QFGIGGALPP KKDVTRNVRW PRNVTLQRKK RILKMRLKVP PALNQFTKTL DKNLATNLFK MLLKYRPEDK
101: AAKKERLVKR AQAEAEGKTP ETKKPIIVKY GLKHITYLIE QNKAQLVVIA HDVDPIELVV WLPALCRKME IPYCIVKGKA RLGSIVHQKT ASALCLTTVK
201: NEDKMEFSRI LEAIKANFND KYEENRKKWG GGIMGSKSQA RTKAKERVLA KEAAQRLN

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.