Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400029374 | |
| PGSC0003DMT400035458 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | PGSC0003DMT400029374 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | PGSC0003DMT400035458 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 96.47 | 95.35 |
| PGSC0003DMT400057989 | Potato | cytosol | 96.08 | 94.96 |
| PGSC0003DMT400083237 | Potato | cytosol | 87.06 | 89.16 |
| PGSC0003DMT400015879 | Potato | cytosol | 48.63 | 84.35 |
| KRH31699 | Soybean | cytosol, nucleus | 81.18 | 79.62 |
| KRH69083 | Soybean | nucleus | 80.78 | 79.23 |
| KRH24214 | Soybean | nucleus | 80.39 | 79.15 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 80.0 | 78.76 |
| Zm00001d006100_P001 | Maize | plasma membrane | 79.22 | 78.29 |
| EER99158 | Sorghum | cytosol | 79.22 | 78.29 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 78.82 | 77.91 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 78.82 | 77.91 |
| Os08t0326400-01 | Rice | cytosol | 78.82 | 77.91 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 78.82 | 77.91 |
| Bra004442.1-P | Field mustard | cytosol | 78.04 | 77.73 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 78.43 | 77.52 |
| AT2G47610.1 | Thale cress | cytosol | 78.04 | 77.43 |
| Zm00001d031640_P001 | Maize | mitochondrion | 78.04 | 77.43 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 78.43 | 77.22 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 78.43 | 77.22 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 78.43 | 77.22 |
| Os01t0924800-00 | Rice | cytosol, golgi | 47.84 | 77.22 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 78.04 | 77.13 |
| Bra014387.1-P | Field mustard | cytosol | 77.25 | 76.95 |
| AT3G62870.1 | Thale cress | cytosol | 76.86 | 76.56 |
| GSMUA_Achr10P... | Banana | cytosol | 78.04 | 74.53 |
| Bra000455.1-P | Field mustard | cytosol | 78.82 | 73.9 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 78.04 | 73.7 |
| GSMUA_Achr11P... | Banana | cytosol | 78.04 | 71.84 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 78.82 | 70.77 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 76.08 | 67.6 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 78.43 | 66.45 |
| KRH15988 | Soybean | cytosol | 19.22 | 62.82 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 79.22 | 61.03 |
| EES03046 | Sorghum | cytosol | 15.69 | 58.82 |
| KXG25835 | Sorghum | cytosol | 15.29 | 57.35 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 76.47 | 56.2 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 78.43 | 52.63 |
| Bra019201.1-P | Field mustard | cytosol | 83.92 | 50.83 |
| Bra013849.1-P | Field mustard | cytosol | 79.22 | 50.0 |
| Bra003512.1-P | Field mustard | cytosol | 70.2 | 44.2 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 17.65 | 30.61 |
| CDY55536 | Canola | cytosol | 9.02 | 22.12 |
| CDX93958 | Canola | cytosol | 9.02 | 22.12 |
| CDX89151 | Canola | cytosol | 9.02 | 21.9 |
| CDY25120 | Canola | cytosol | 5.49 | 11.2 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0030529 | GO:GO:0042254 | GO:GO:1990904 | InterPro:IPR029064 | InterPro:IPR038524 | InterPro:L30e-like |
| UniProt:M0ZV98 | PFAM:PF01248 | EnsemblPlantsGene:PGSC0003DMG400003467 | PGSC:PGSC0003DMG400003467 | EnsemblPlants:PGSC0003DMT400008912 | PRINTS:PR00881 |
| PRINTS:PR00882 | ScanProsite:PS01082 | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf |
| InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | UniParc:UPI0002963EA0 | SEG:seg |
Description
60S ribosomal protein L7A [Source:PGSC_GENE;Acc:PGSC0003DMG400003467]
Coordinates
chr6:-:32560160..32562447
Molecular Weight (calculated)
29008.2 Da
IEP (calculated)
11.040
GRAVY (calculated)
-0.527
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRGVAVA AKKTSKVVNP LFEKRPKQFG IGGALPPKKD VTRNVRWPRN VTLQRKKRIL KMRLKVPPAL YQFTKTLDKN LATNLFKMLL KYRPEDKAAK
101: KERLVKRAQA EAEGKTPETK KPIIVKYGLK HITYLIEQNK AQLVVIAHDV DPIELVVWLP ALCRKMEIPY CIVKGKARLG SIVHKKTASA LCLTTVKNED
201: KMEFSRVLEA IKANFNDKYE ENRKKWGGGI MGSKSQARTK AKERILAKEA AQRLN
101: KERLVKRAQA EAEGKTPETK KPIIVKYGLK HITYLIEQNK AQLVVIAHDV DPIELVVWLP ALCRKMEIPY CIVKGKARLG SIVHKKTASA LCLTTVKNED
201: KMEFSRVLEA IKANFNDKYE ENRKKWGGGI MGSKSQARTK AKERILAKEA AQRLN
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.