CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12155
KRH37161

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	KRH12155	AT1G30860.1	21798944
AT2G47610.1	KRH37161	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29218	Soybean	endoplasmic reticulum, nucleus	99.23	99.23
KRH31699	Soybean	cytosol, nucleus	93.44	93.08
KRH69083	Soybean	nucleus	93.44	93.08
Os01t0924800-00	Rice	cytosol, golgi	54.83	89.87
KRH15988	Soybean	cytosol	27.03	89.74
Os09t0507800-01	Rice	nucleus, plasma membrane	89.19	89.53
Os08t0326400-01	Rice	cytosol	89.19	89.53
EER99158	Sorghum	cytosol	88.8	89.15
Zm00001d006100_P001	Maize	plasma membrane	88.8	89.15
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	88.42	88.76
Zm00001d031640_P001	Maize	mitochondrion	88.03	88.72
TraesCS7D01G262800.2	Wheat	cytosol	87.64	87.98
TraesCS7A01G261600.1	Wheat	cytosol, plastid	87.64	87.98
TraesCS7B01G159700.1	Wheat	cytosol	87.26	87.6
TraesCS5B01G287900.1	Wheat	cytosol	87.26	87.26
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	87.26	87.26
TraesCS5D01G296200.1	Wheat	cytosol	87.26	87.26
GSMUA_Achr10P...	Banana	cytosol	89.58	86.89
Bra004442.1-P	Field mustard	cytosol	84.94	85.94
AT2G47610.1	Thale cress	cytosol	84.94	85.6
AT3G62870.1	Thale cress	cytosol	84.17	85.16
Bra014387.1-P	Field mustard	cytosol	83.78	84.77
HORVU7Hr1G054670.5	Barley	cytosol	87.26	83.7
CDX93955	Canola	cytosol	84.56	83.27
CDY55535	Canola	extracellular	30.5	83.16
GSMUA_Achr11P...	Banana	cytosol	87.64	81.95
CDX89154	Canola	cytosol	84.17	81.34
PGSC0003DMT400008912	Potato	cytosol, plastid	79.15	80.39
CDY66035	Canola	cytosol	80.69	80.38
Solyc06g064470.2.1	Tomato	nucleus	79.92	80.23
Bra000455.1-P	Field mustard	cytosol	84.17	80.15
CDX83325	Canola	cytosol	84.17	80.15
HORVU5Hr1G076700.2	Barley	cytosol	87.64	79.93
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	79.54	79.84
Solyc01g097760.2.1	Tomato	nucleus	79.54	79.84
Solyc06g050120.2.1	Tomato	nucleus	79.54	79.54
CDX80121	Canola	cytosol	80.69	79.47
PGSC0003DMT400057989	Potato	cytosol	79.15	79.46
GSMUA_Achr3P03600_001	Banana	cytosol	88.03	79.44
CDX95727	Canola	cytosol	83.78	77.78
VIT_14s0068g01640.t01	Wine grape	mitochondrion	89.96	77.67
CDX76668	Canola	extracellular	84.17	77.31
PGSC0003DMT400083237	Potato	cytosol	71.43	74.3
PGSC0003DMT400015879	Potato	cytosol	42.08	74.15
CDY11453	Canola	cytosol	84.56	73.49
KXG35979	Sorghum	cytosol, mitochondrion	88.8	69.49
Solyc10g018810.1.1	Tomato	cytosol	20.46	68.83
GSMUA_Achr6P21550_001	Banana	cytosol	88.03	65.71
Solyc01g020290.1.1	Tomato	cytosol	13.51	64.81
EES03046	Sorghum	cytosol	16.6	63.24
CDX92144	Canola	extracellular	78.76	62.96
KXG25835	Sorghum	cytosol	16.22	61.76
CDY03061	Canola	extracellular	25.48	61.68
GSMUA_Achr6P14640_001	Banana	cytosol	89.58	61.05
Solyc11g042870.1.1	Tomato	cytosol	20.46	60.23
CDY25121	Canola	cytosol	81.85	54.78
Bra013849.1-P	Field mustard	cytosol	84.17	53.96
CDY34328	Canola	nucleus	83.78	53.71
CDY03403	Canola	cytosol	83.01	52.57
CDY08962	Canola	endoplasmic reticulum, extracellular	20.85	50.47
Bra003512.1-P	Field mustard	cytosol	77.22	49.38
CDX92662	Canola	cytosol	78.76	49.28
CDY11043	Canola	cytosol	79.92	49.17
Bra019201.1-P	Field mustard	cytosol	79.92	49.17
CDX67906	Canola	extracellular	80.69	47.18
CDY33717	Canola	cytosol	33.2	43.22
TraesCS4D01G148500.2	Wheat	cytosol	18.92	33.33
CDY55536	Canola	cytosol	9.27	23.08
CDX93958	Canola	cytosol	9.27	23.08
CDX89151	Canola	cytosol	9.27	22.86
CDY25120	Canola	cytosol	6.18	12.8

Protein Annotations

EntrezGene:100775472	MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	EMBL:ACUP02007172	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G028500
GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904	UniProt:I1LPL2	InterPro:IPR029064
InterPro:IPR038524	EnsemblPlants:KRH24214	ProteinID:KRH24214	ProteinID:KRH24214.1	InterPro:L30e-like	PFAM:PF01248
PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8
InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI000233C16C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2130741..2132946

Molecular Weight (calculated)

29416.6 Da

IEP (calculated)

10.934

GRAVY (calculated)

-0.569

Length

259 amino acids

Sequence
(BLAST)

001: MAPKRGGKAP ALAAKKKPEK VSNPLFEKRP KQFGIGGALP PKRDLTRFVK WPKNVQIQRK KRILKQRLKV PPALNQFTKT LDKNLATSLF KLLLKYRPED
101: KAEKKERLLK RAQAEAEGKT VEAKKPIVVK YGLNHVTYLI EQNKAQLVVI AHDVDPIELV VWLPALCRKM EIPYCIVKGK ARLGTVVHKK TASVLCLTTV
201: KNEDKLEFSR VLEAIKANFN DKYDEYRKKW GGGIMGSKSQ AKTRAKEKLL AKEAAQRMN

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.