CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93955	Canola	cytosol	53.5	90.11
AT3G62870.1	Thale cress	cytosol	51.47	89.06
CDX89154	Canola	cytosol	53.72	88.81
CDY66035	Canola	cytosol	51.24	87.31
CDX80121	Canola	cytosol	51.47	86.69
CDX83325	Canola	cytosol	52.6	85.66
CDX76668	Canola	extracellular	54.18	85.11
CDY55535	Canola	extracellular	17.83	83.16
CDX95727	Canola	cytosol	52.14	82.8
Bra003512.1-P	Field mustard	cytosol	74.72	81.73
Zm00001d006100_P001	Maize	plasma membrane	47.4	81.4
KRH31699	Soybean	cytosol, nucleus	47.63	81.15
KRH29218	Soybean	endoplasmic reticulum, nucleus	47.4	81.08
TraesCS7D01G262800.2	Wheat	cytosol	47.18	81.01
TraesCS7A01G261600.1	Wheat	cytosol, plastid	47.18	81.01
Os09t0507800-01	Rice	nucleus, plasma membrane	47.18	81.01
Os08t0326400-01	Rice	cytosol	47.18	81.01
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	47.18	81.01
CDY11453	Canola	cytosol	54.4	80.87
KRH69083	Soybean	nucleus	47.4	80.77
KRH24214	Soybean	nucleus	47.18	80.69
TraesCS7B01G159700.1	Wheat	cytosol	46.95	80.62
EER99158	Sorghum	cytosol	46.95	80.62
Zm00001d031640_P001	Maize	mitochondrion	46.73	80.54
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	46.5	79.54
TraesCS5B01G287900.1	Wheat	cytosol	46.5	79.54
TraesCS5D01G296200.1	Wheat	cytosol	46.5	79.54
HORVU7Hr1G054670.5	Barley	cytosol	47.18	77.41
Os01t0924800-00	Rice	cytosol, golgi	27.54	77.22
GSMUA_Achr10P...	Banana	cytosol	46.28	76.78
KRH15988	Soybean	cytosol	13.32	75.64
GSMUA_Achr11P...	Banana	cytosol	46.5	74.37
HORVU5Hr1G076700.2	Barley	cytosol	47.4	73.94
CDX92144	Canola	extracellular	53.27	72.84
GSMUA_Achr3P03600_001	Banana	cytosol	45.82	70.73
CDY25121	Canola	cytosol	59.14	67.7
KXG35979	Sorghum	cytosol, mitochondrion	48.53	64.95
GSMUA_Achr6P21550_001	Banana	cytosol	47.18	60.23
CDY03061	Canola	extracellular	14.0	57.94
CDY08962	Canola	endoplasmic reticulum, extracellular	14.0	57.94
CDY34328	Canola	nucleus	51.24	56.19
GSMUA_Achr6P14640_001	Banana	cytosol	47.86	55.79
CDY03403	Canola	cytosol	51.02	55.26
CDX92662	Canola	cytosol	48.31	51.69
EES03046	Sorghum	cytosol	7.9	51.47
KXG25835	Sorghum	cytosol	7.9	51.47
CDY11043	Canola	cytosol	48.76	51.31
CDY33717	Canola	cytosol	20.09	44.72
TraesCS4D01G148500.2	Wheat	cytosol	9.93	29.93
CDX93958	Canola	cytosol	5.19	22.12
CDY55536	Canola	cytosol	5.19	22.12
CDX89151	Canola	cytosol	5.19	21.9
CDY25120	Canola	cytosol	2.93	10.4

Protein Annotations

MapMan:16.4.2.3	MapMan:17.1.2.1.6	Gene3D:2.30.30.100	Gene3D:3.30.1330.210	GO:A0A078BT17	EnsemblPlants:CDX67906
ProteinID:CDX67906	ProteinID:CDX67906.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030532
GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00099113001	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01248	PFAM:PF01423	PRINTS:PR00881	PRINTS:PR00882
ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SMART:SM00651	SUPFAM:SSF50182	SUPFAM:SSF55315	InterPro:Sm_D2
UniParc:UPI0004EEC08A	SEG:seg	:	:	:	:

Description

BnaA07g19460D

Coordinates

chrLK031787:-:2825578..2828728

Molecular Weight (calculated)

50935.7 Da

IEP (calculated)

10.648

GRAVY (calculated)

-0.538

Length

443 amino acids

Sequence
(BLAST)

001: MSNMKNRIYS ITTYSRYYHF SDHRTTSETI FYVSQFTAVG LVHTLNQPVD GQSPPLSPPS ASRNRQHPMA PKRGVKVVAK KKTEKVTNPL FERRPKQFGI
101: GGALPPKKDL TRYIKWPKSI RLQRQKRILK QRLKVPPALN QFTKTLDKNL ATQLFKVLMK YRPEDKAAKK DRLLKKAQAE AEGKPSESKK PIVVKYGLNH
201: VTYLIEQNKA QLVVIAHDVD PIELVVWLPA LCRKMEVPYC IVKGKSRLGT VVHQKTAACL CLTTVKNEDK LEFSKILEAI KANFNDKYEE YRKKWGGGIM
301: GSKSQAKTKA KERCKLYLTP IEDFYFLTLA FCLVFCSRPM EEDTNGKTEE EEFNTGPLSV LMMSVKNNTQ VLINCRNNRK LLGRVRAFDR HCNMVLENVR
401: EMWTEVPKTG KGKKKALPVN RDRFISKMFL RGDSVIIVLR NPK

Best Arabidopsis Sequence Match ( AT3G62840.2 )
(BLAST)

001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.