Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80121 | Canola | cytosol | 63.55 | 25.86 |
| CDY66035 | Canola | cytosol | 62.62 | 25.77 |
| KRH15988 | Soybean | cytosol | 18.69 | 25.64 |
| CDX83325 | Canola | cytosol | 63.55 | 25.0 |
| CDX93955 | Canola | cytosol | 60.75 | 24.71 |
| CDX76668 | Canola | extracellular | 64.49 | 24.47 |
| CDX89154 | Canola | cytosol | 60.75 | 24.25 |
| CDX95727 | Canola | cytosol | 62.62 | 24.01 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 30.84 | 22.45 |
| CDY11453 | Canola | cytosol | 59.81 | 21.48 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 51.4 | 21.24 |
| KRH31699 | Soybean | cytosol, nucleus | 51.4 | 21.15 |
| GSMUA_Achr10P... | Banana | cytosol | 52.34 | 20.97 |
| KRH24214 | Soybean | nucleus | 50.47 | 20.85 |
| KRH69083 | Soybean | nucleus | 50.47 | 20.77 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 49.53 | 20.54 |
| Os08t0326400-01 | Rice | cytosol | 49.53 | 20.54 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 49.53 | 20.54 |
| GSMUA_Achr11P... | Banana | cytosol | 52.34 | 20.22 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 48.6 | 20.16 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 48.6 | 20.16 |
| Zm00001d006100_P001 | Maize | plasma membrane | 48.6 | 20.16 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 48.6 | 20.16 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 50.47 | 20.0 |
| Zm00001d031640_P001 | Maize | mitochondrion | 47.66 | 19.84 |
| EER99158 | Sorghum | cytosol | 47.66 | 19.77 |
| CDX92144 | Canola | extracellular | 59.81 | 19.75 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 47.66 | 19.69 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 47.66 | 19.69 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 47.66 | 19.69 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 51.4 | 19.16 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 47.66 | 17.96 |
| CDY25121 | Canola | cytosol | 60.75 | 16.8 |
| CDX92662 | Canola | cytosol | 62.62 | 16.18 |
| CDY34328 | Canola | nucleus | 60.75 | 16.09 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 49.53 | 16.01 |
| CDY11043 | Canola | cytosol | 62.62 | 15.91 |
| Bra019201.1-P | Field mustard | cytosol | 62.62 | 15.91 |
| CDY03403 | Canola | cytosol | 59.81 | 15.65 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 50.47 | 15.56 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 51.4 | 14.47 |
| CDX67906 | Canola | extracellular | 57.94 | 14.0 |
| CDY55536 | Canola | cytosol | 4.67 | 4.81 |
| CDX93958 | Canola | cytosol | 4.67 | 4.81 |
| CDY25120 | Canola | cytosol | 5.61 | 4.8 |
| CDX89151 | Canola | cytosol | 4.67 | 4.76 |
| CDY33717 | Canola | cytosol | 7.48 | 4.02 |
| CDY55535 | Canola | extracellular | 2.8 | 3.16 |
| CDY03061 | Canola | extracellular | 0.93 | 0.93 |
| KXG25835 | Sorghum | cytosol | 0.0 | 0.0 |
| EES03046 | Sorghum | cytosol | 0.0 | 0.0 |
| Os01t0924800-00 | Rice | cytosol, golgi | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY08962 | EnsemblPlantsGene:GSBRNA2T00001012001 | Gene3D:3.30.1330.210 | GO:A0A078F775 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR038524 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 |
| PRINTS:PR00882 | ProteinID:CDY08962 | ProteinID:CDY08962.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDAF96 |
| UniProt:A0A078F775 | MapMan:35.2 | : | : | : | : |
Description
BnaC08g11920DBnaC08g11920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F775]
Coordinates
chrLK031990:+:860507..860984
Molecular Weight (calculated)
12328.6 Da
IEP (calculated)
11.152
GRAVY (calculated)
-0.307
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MELICTSIVY LFVSLHIGIY LLLATQAPKK GVKVATKKKP EKVTNHLFER RPKQFGVGGA LPPKIYLTGY IKWPKSIRLQ RQKRILKQRL KVPPELNQFS
101: TKTLDKN
101: TKTLDKN
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.