Factsheet for GSMUA_Achr10P14200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P33210_001
GSMUA_Achr7P00390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT2G47610.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0507800-01	Rice	nucleus, plasma membrane	89.89	93.02
EER99158	Sorghum	cytosol	89.89	93.02
Os08t0326400-01	Rice	cytosol	89.89	93.02
Zm00001d006100_P001	Maize	plasma membrane	89.89	93.02
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	89.51	92.64
Zm00001d031640_P001	Maize	mitochondrion	89.14	92.61
TraesCS7D01G262800.2	Wheat	cytosol	87.64	90.7
TraesCS7A01G261600.1	Wheat	cytosol, plastid	87.64	90.7
GSMUA_Achr11P...	Banana	cytosol	94.01	90.61
Os01t0924800-00	Rice	cytosol, golgi	53.56	90.51
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	87.64	90.35
TraesCS5B01G287900.1	Wheat	cytosol	87.64	90.35
TraesCS5D01G296200.1	Wheat	cytosol	87.64	90.35
TraesCS7B01G159700.1	Wheat	cytosol	87.27	90.31
KRH29218	Soybean	endoplasmic reticulum, nucleus	87.27	89.96
KRH24214	Soybean	nucleus	86.89	89.58
KRH69083	Soybean	nucleus	86.14	88.46
KRH31699	Soybean	cytosol, nucleus	86.14	88.46
HORVU7Hr1G054670.5	Barley	cytosol	87.27	86.3
GSMUA_Achr3P03600_001	Banana	cytosol	92.51	86.06
AT2G47610.1	Thale cress	cytosol	80.9	84.05
AT3G62870.1	Thale cress	cytosol	80.52	83.98
KRH15988	Soybean	cytosol	24.34	83.33
Bra004442.1-P	Field mustard	cytosol	79.78	83.2
HORVU5Hr1G076700.2	Barley	cytosol	88.39	83.1
Bra014387.1-P	Field mustard	cytosol	79.4	82.81
CDX93955	Canola	cytosol	79.03	80.23
CDX89154	Canola	cytosol	80.15	79.85
VIT_17s0000g00980.t01	Wine grape	cytosol	88.76	79.0
PGSC0003DMT400057989	Potato	cytosol	76.03	78.68
Solyc01g097760.2.1	Tomato	nucleus	76.03	78.68
CDY66035	Canola	cytosol	76.4	78.46
Bra000455.1-P	Field mustard	cytosol	79.78	78.31
CDX83325	Canola	cytosol	79.78	78.31
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	75.66	78.29
Solyc06g064470.2.1	Tomato	nucleus	75.66	78.29
PGSC0003DMT400008912	Potato	cytosol, plastid	74.53	78.04
Solyc06g050120.2.1	Tomato	nucleus	75.66	77.99
CDX80121	Canola	cytosol	76.78	77.95
VIT_14s0068g01640.t01	Wine grape	mitochondrion	86.52	77.0
CDY55535	Canola	extracellular	27.34	76.84
CDX95727	Canola	cytosol	79.78	76.34
CDX76668	Canola	extracellular	79.78	75.53
VIT_14s0083g00970.t01	Wine grape	plastid	85.02	75.42
PGSC0003DMT400015879	Potato	cytosol	40.82	74.15
PGSC0003DMT400083237	Potato	cytosol	68.16	73.09
KXG35979	Sorghum	cytosol, mitochondrion	90.26	72.81
CDY11453	Canola	cytosol	80.15	71.81
GSMUA_Achr6P21550_001	Banana	cytosol	92.88	71.47
Solyc10g018810.1.1	Tomato	cytosol	19.85	68.83
EES03046	Sorghum	cytosol	16.85	66.18
GSMUA_Achr6P14640_001	Banana	cytosol	94.01	66.05
KXG25835	Sorghum	cytosol	16.1	63.24
CDX92144	Canola	extracellular	76.03	62.65
Solyc01g020290.1.1	Tomato	cytosol	11.98	59.26
Solyc11g042870.1.1	Tomato	cytosol	19.48	59.09
CDY03061	Canola	extracellular	23.22	57.94
CDY25121	Canola	cytosol	78.28	54.01
CDY34328	Canola	nucleus	81.27	53.71
Bra013849.1-P	Field mustard	cytosol	81.27	53.71
CDY03403	Canola	cytosol	80.52	52.57
CDY08962	Canola	endoplasmic reticulum, extracellular	20.97	52.34
CDY11043	Canola	cytosol	77.15	48.93
Bra019201.1-P	Field mustard	cytosol	77.15	48.93
CDX92662	Canola	cytosol	75.66	48.79
Bra003512.1-P	Field mustard	cytosol	73.41	48.4
CDX67906	Canola	extracellular	76.78	46.28
CDY33717	Canola	cytosol	32.21	43.22
TraesCS4D01G148500.2	Wheat	cytosol	20.22	36.73
CDY55536	Canola	cytosol	8.99	23.08
CDX93958	Canola	cytosol	8.99	23.08
CDX89151	Canola	cytosol	8.99	22.86
CDY25120	Canola	cytosol	6.74	14.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSMUA_Achr10G14200_001	EnsemblPlants:GSMUA_Achr10P14200_001
EnsemblPlants:GSMUA_Achr10T14200_001	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	UniProt:M0RI46	PFAM:PF01248
PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8
InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI000294F0D8
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L7a [Source:GMGC_GENE;Acc:GSMUA_Achr10G14200_001]

Coordinates

chr10:+:22556272..22561381

Molecular Weight (calculated)

30470.3 Da

IEP (calculated)

11.003

GRAVY (calculated)

-0.414

Length

267 amino acids

Sequence
(BLAST)

001: MIVLKTWYEM APKKGGKAPV PAKKKPEKVV NPLFEKRPKQ FGIGGALPPK RDLHRFVKWP KVVRIQRQKR ILKQRLKVPP ALNQFTRTLD KNLATNLFKM
101: LLKYRPEDRA AKKERLLKRA QAEAEGKTVE VKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEI PYCIVKGKAR LGAIVHKKTA
201: SVLCLTTVKN EDKLEFSKIL EAIKANFNDK FDEIRRKWGG GIMGSKSLAK SKAKEKLLAK EAAQRLT

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.