Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g082100.2.1 | |
| Solyc10g005220.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | Solyc02g082100.2.1 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | Solyc10g005220.2.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG25835 | Sorghum | cytosol | 50.0 | 39.71 |
| EES03046 | Sorghum | cytosol | 48.15 | 38.24 |
| Solyc10g018810.1.1 | Tomato | cytosol | 53.7 | 37.66 |
| Solyc11g042870.1.1 | Tomato | cytosol | 37.04 | 22.73 |
| Os01t0924800-00 | Rice | cytosol, golgi | 59.26 | 20.25 |
| Solyc06g064470.2.1 | Tomato | nucleus | 81.48 | 17.05 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 81.48 | 17.05 |
| Solyc06g050120.2.1 | Tomato | nucleus | 81.48 | 16.99 |
| Solyc01g097760.2.1 | Tomato | nucleus | 79.63 | 16.67 |
| Bra004442.1-P | Field mustard | cytosol | 68.52 | 14.45 |
| Bra014387.1-P | Field mustard | cytosol | 68.52 | 14.45 |
| AT3G62870.1 | Thale cress | cytosol | 66.67 | 14.06 |
| AT2G47610.1 | Thale cress | cytosol | 66.67 | 14.01 |
| Bra000455.1-P | Field mustard | cytosol | 70.37 | 13.97 |
| KRH24214 | Soybean | nucleus | 64.81 | 13.51 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 62.96 | 13.13 |
| KRH31699 | Soybean | cytosol, nucleus | 62.96 | 13.08 |
| KRH69083 | Soybean | nucleus | 62.96 | 13.08 |
| Zm00001d031640_P001 | Maize | mitochondrion | 59.26 | 12.45 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 59.26 | 12.4 |
| Zm00001d006100_P001 | Maize | plasma membrane | 59.26 | 12.4 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 59.26 | 12.4 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 59.26 | 12.4 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 59.26 | 12.4 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 59.26 | 12.36 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 59.26 | 12.36 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 59.26 | 12.36 |
| EER99158 | Sorghum | cytosol | 57.41 | 12.02 |
| Os08t0326400-01 | Rice | cytosol | 57.41 | 12.02 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 57.41 | 12.02 |
| GSMUA_Achr10P... | Banana | cytosol | 59.26 | 11.98 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 59.26 | 11.85 |
| GSMUA_Achr11P... | Banana | cytosol | 59.26 | 11.55 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 59.26 | 11.27 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 59.26 | 11.15 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 55.56 | 9.97 |
| Bra019201.1-P | Field mustard | cytosol | 75.93 | 9.74 |
| Bra013849.1-P | Field mustard | cytosol | 70.37 | 9.41 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 57.41 | 9.37 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 59.26 | 9.22 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 59.26 | 8.42 |
| Bra003512.1-P | Field mustard | cytosol | 51.85 | 6.91 |
| CDX93958 | Canola | cytosol | 7.41 | 3.85 |
| CDY55536 | Canola | cytosol | 7.41 | 3.85 |
| CDX89151 | Canola | cytosol | 7.41 | 3.81 |
| KRH15988 | Soybean | cytosol | 3.7 | 2.56 |
| CDY25120 | Canola | cytosol | 5.56 | 2.4 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 3.7 | 1.36 |
Protein Annotations
| EnsemblPlants:Solyc01g020290.1.1 | EnsemblPlantsGene:Solyc01g020290.1 | Gene3D:3.30.1330.210 | InterPro:IPR038524 | InterPro:Ribosomal_L7A/L8_sf | PANTHER:PTHR23105 |
| PANTHER:PTHR23105:SF70 | UniParc:UPI0002762D27 | UniProt:K4AV11 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1:+:28949136..28949300
Molecular Weight (calculated)
6304.6 Da
IEP (calculated)
9.335
GRAVY (calculated)
-0.663
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MEFSRVFEAI KVNFNDNYEE NMRKWGCGIM GSMSQARTKS MERVLAKEAA QRLN
001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
Arabidopsis Description
RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.