Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G229600.2 | |
| TraesCS2B01G251300.1 | |
| TraesCS2D01G233500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | TraesCS2A01G229600.2 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | TraesCS2B01G251300.1 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | TraesCS2D01G233500.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G159700.1 | Wheat | cytosol | 99.61 | 99.61 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 99.22 | 99.22 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 98.84 | 98.46 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 99.61 | 95.19 |
| Zm00001d031640_P001 | Maize | mitochondrion | 94.57 | 94.94 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 87.98 | 87.64 |
| KRH24214 | Soybean | nucleus | 87.98 | 87.64 |
| GSMUA_Achr10P... | Banana | cytosol | 90.7 | 87.64 |
| KRH69083 | Soybean | nucleus | 87.21 | 86.54 |
| KRH31699 | Soybean | cytosol, nucleus | 87.21 | 86.54 |
| Bra004442.1-P | Field mustard | cytosol | 84.88 | 85.55 |
| AT2G47610.1 | Thale cress | cytosol | 84.88 | 85.21 |
| GSMUA_Achr11P... | Banana | cytosol | 91.47 | 85.2 |
| AT3G62870.1 | Thale cress | cytosol | 84.5 | 85.16 |
| Bra014387.1-P | Field mustard | cytosol | 84.11 | 84.77 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 92.25 | 82.93 |
| CDX93955 | Canola | cytosol | 84.11 | 82.51 |
| CDY55535 | Canola | extracellular | 29.84 | 81.05 |
| CDX89154 | Canola | cytosol | 84.11 | 80.97 |
| KRH15988 | Soybean | cytosol | 24.42 | 80.77 |
| CDY66035 | Canola | cytosol | 80.62 | 80.0 |
| CDX80121 | Canola | cytosol | 80.62 | 79.09 |
| Bra000455.1-P | Field mustard | cytosol | 83.33 | 79.04 |
| CDX83325 | Canola | cytosol | 83.33 | 79.04 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 77.52 | 78.43 |
| PGSC0003DMT400057989 | Potato | cytosol | 77.52 | 77.52 |
| Solyc01g097760.2.1 | Tomato | nucleus | 77.52 | 77.52 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 77.52 | 77.52 |
| Solyc06g064470.2.1 | Tomato | nucleus | 77.13 | 77.13 |
| CDX76668 | Canola | extracellular | 84.11 | 76.95 |
| Solyc06g050120.2.1 | Tomato | nucleus | 77.13 | 76.83 |
| CDX95727 | Canola | cytosol | 82.95 | 76.7 |
| VIT_14s0068g01640.t01 | Wine grape | mitochondrion | 88.76 | 76.33 |
| VIT_17s0000g00980.t01 | Wine grape | cytosol | 88.37 | 76.0 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 88.37 | 75.75 |
| CDY11453 | Canola | cytosol | 84.5 | 73.15 |
| PGSC0003DMT400083237 | Potato | cytosol | 70.16 | 72.69 |
| PGSC0003DMT400015879 | Potato | cytosol | 40.7 | 71.43 |
| EES03046 | Sorghum | cytosol | 18.6 | 70.59 |
| Solyc10g018810.1.1 | Tomato | cytosol | 20.93 | 70.13 |
| KXG25835 | Sorghum | cytosol | 18.22 | 69.12 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 91.09 | 67.72 |
| CDX92144 | Canola | extracellular | 78.68 | 62.65 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 92.25 | 62.63 |
| CDY03061 | Canola | extracellular | 25.19 | 60.75 |
| Solyc01g020290.1.1 | Tomato | cytosol | 12.4 | 59.26 |
| Solyc11g042870.1.1 | Tomato | cytosol | 19.77 | 57.95 |
| CDY25121 | Canola | cytosol | 82.56 | 55.04 |
| CDY34328 | Canola | nucleus | 84.5 | 53.96 |
| Bra013849.1-P | Field mustard | cytosol | 84.5 | 53.96 |
| CDY03403 | Canola | cytosol | 84.11 | 53.06 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 20.54 | 49.53 |
| CDX92662 | Canola | cytosol | 78.68 | 49.03 |
| Bra003512.1-P | Field mustard | cytosol | 76.74 | 48.89 |
| CDY11043 | Canola | cytosol | 79.07 | 48.46 |
| Bra019201.1-P | Field mustard | cytosol | 79.07 | 48.46 |
| CDX67906 | Canola | extracellular | 81.01 | 47.18 |
| CDY33717 | Canola | cytosol | 32.17 | 41.71 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 21.32 | 37.41 |
| CDY55536 | Canola | cytosol | 10.47 | 25.96 |
| CDX93958 | Canola | cytosol | 10.47 | 25.96 |
| CDX89151 | Canola | cytosol | 10.47 | 25.71 |
| CDY25120 | Canola | cytosol | 7.36 | 15.2 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0042254 |
| GO:GO:1990904 | InterPro:IPR029064 | InterPro:IPR038524 | InterPro:L30e-like | PFAM:PF01248 | PRINTS:PR00881 |
| PRINTS:PR00882 | ScanProsite:PS01082 | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf |
| InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | EnsemblPlantsGene:TraesCS7D01G262800 | EnsemblPlants:TraesCS7D01G262800.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:242006772..242008932
Molecular Weight (calculated)
29385.7 Da
IEP (calculated)
11.088
GRAVY (calculated)
-0.518
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRGGKAP VPAKKKTEKV TNPLFEKRPK QFGIGGALPP KKDLHRFVKW PKVVRIQRQR RILKQRLKVP PALHQFTRTL DKNLATNLFK MLLKYRPEDK
101: VAKKERLLKR AQAEAEGKTV EAKKPIVVKY GLNHVTYLIE QSKAQLVVIA HDVDPIELVV WLPALCRKME VPYCIVKGKS RLGSIVHKKT ASVLCLTTVK
201: NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGVMGSKSQA KTKARERLIA KEAAQRMN
101: VAKKERLLKR AQAEAEGKTV EAKKPIVVKY GLNHVTYLIE QSKAQLVVIA HDVDPIELVV WLPALCRKME VPYCIVKGKS RLGSIVHKKT ASVLCLTTVK
201: NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGVMGSKSQA KTKARERLIA KEAAQRMN
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.