Factsheet for VIT_14s0068g01640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29218	Soybean	endoplasmic reticulum, nucleus	78.0	90.35
KRH24214	Soybean	nucleus	77.67	89.96
Os01t0924800-00	Rice	cytosol, golgi	47.33	89.87
EER99158	Sorghum	cytosol	77.0	89.53
Os09t0507800-01	Rice	nucleus, plasma membrane	76.67	89.15
Os08t0326400-01	Rice	cytosol	76.67	89.15
Zm00001d006100_P001	Maize	plasma membrane	76.67	89.15
KRH31699	Soybean	cytosol, nucleus	77.0	88.85
TraesCS7D01G262800.2	Wheat	cytosol	76.33	88.76
TraesCS7A01G261600.1	Wheat	cytosol, plastid	76.33	88.76
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	76.33	88.76
Zm00001d031640_P001	Maize	mitochondrion	76.0	88.72
KRH69083	Soybean	nucleus	76.67	88.46
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	76.33	88.42
TraesCS5B01G287900.1	Wheat	cytosol	76.33	88.42
TraesCS5D01G296200.1	Wheat	cytosol	76.33	88.42
TraesCS7B01G159700.1	Wheat	cytosol	76.0	88.37
GSMUA_Achr10P...	Banana	cytosol	77.0	86.52
HORVU7Hr1G054670.5	Barley	cytosol	76.33	84.81
GSMUA_Achr11P...	Banana	cytosol	76.67	83.03
HORVU5Hr1G076700.2	Barley	cytosol	77.33	81.69
VIT_17s0000g00980.t01	Wine grape	cytosol	80.67	80.67
GSMUA_Achr3P03600_001	Banana	cytosol	77.0	80.49
KRH15988	Soybean	cytosol	20.33	78.21
VIT_14s0083g00970.t01	Wine grape	plastid	77.67	77.41
KXG35979	Sorghum	cytosol, mitochondrion	78.67	71.3
GSMUA_Achr6P21550_001	Banana	cytosol	76.33	65.99
EES03046	Sorghum	cytosol	14.67	64.71
KXG25835	Sorghum	cytosol	14.33	63.24
GSMUA_Achr6P14640_001	Banana	cytosol	76.67	60.53
TraesCS4D01G148500.2	Wheat	cytosol	17.67	36.05

Protein Annotations

EntrezGene:100246265	wikigene:100246265	MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	ProteinID:CCB47004	ProteinID:CCB47004.1
ncoils:Coil	UniProt:F6H461	EMBL:FN595232	GO:GO:0000470	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	GO:GO:0042254
GO:GO:1990904	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	EntrezGene:LOC100246265	wikigene:LOC100246265
PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70
InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315
UniParc:UPI0002107E91	ArrayExpress:VIT_14s0068g01640	EnsemblPlantsGene:VIT_14s0068g01640	EnsemblPlants:VIT_14s0068g01640.t01	RefSeq:XP_002274777	RefSeq:XP_002274777.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:25338620..25342236

Molecular Weight (calculated)

34132.5 Da

IEP (calculated)

11.096

GRAVY (calculated)

-0.457

Length

300 amino acids

Sequence
(BLAST)

001: MRNILQAKMS PTRYIVWGTA GLGFRVSPSP FANPYHRWLI LFAPKKGVKA PAALAKKKQE KVVNPLFEKR PKQFGIGGAL PPKRDLSRFV KFPKHVQIQR
101: KRRILKQRLK VPPALNQFTK TLDKNLATSL FKMLLKYRPE DKAAKKERLL KRAQAEAEGK TAETKKPIVV KYGLNHVTYL IEQNKAQLVV IAHDVDPIEL
201: VVWLPALCRK MEIPYCIVKG KSRLGSIVHK KTASVLCLTT VKNEDKLEFS KILEAIKANF NDKYDENRKK WGGGIMGSKS QARTKAKERL VAKEAAQRMT

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.