Factsheet for GSMUA_Achr11P10270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P33210_001
GSMUA_Achr7P00390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT2G47610.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	90.61	94.01
Os08t0326400-01	Rice	cytosol	87.36	93.8
EER99158	Sorghum	cytosol	87.36	93.8
Os09t0507800-01	Rice	nucleus, plasma membrane	87.36	93.8
Zm00001d006100_P001	Maize	plasma membrane	87.36	93.8
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	87.0	93.41
Zm00001d031640_P001	Maize	mitochondrion	86.64	93.39
Os01t0924800-00	Rice	cytosol, golgi	52.35	91.77
TraesCS7D01G262800.2	Wheat	cytosol	85.2	91.47
TraesCS7A01G261600.1	Wheat	cytosol, plastid	85.2	91.47
TraesCS5D01G296200.1	Wheat	cytosol	85.2	91.12
TraesCS5B01G287900.1	Wheat	cytosol	85.2	91.12
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	85.2	91.12
TraesCS7B01G159700.1	Wheat	cytosol	84.84	91.09
KRH29218	Soybean	endoplasmic reticulum, nucleus	82.31	88.03
KRH24214	Soybean	nucleus	81.95	87.64
HORVU7Hr1G054670.5	Barley	cytosol	85.2	87.41
KRH31699	Soybean	cytosol, nucleus	81.59	86.92
KRH69083	Soybean	nucleus	81.23	86.54
GSMUA_Achr3P03600_001	Banana	cytosol	88.81	85.71
HORVU5Hr1G076700.2	Barley	cytosol	87.0	84.86
AT3G62870.1	Thale cress	cytosol	77.26	83.59
AT2G47610.1	Thale cress	cytosol	77.26	83.27
Bra004442.1-P	Field mustard	cytosol	76.9	83.2
Bra014387.1-P	Field mustard	cytosol	76.17	82.42
KRH15988	Soybean	cytosol	22.74	80.77
CDX93955	Canola	cytosol	76.17	80.23
VIT_17s0000g00980.t01	Wine grape	cytosol	85.56	79.0
CDX89154	Canola	cytosol	76.17	78.73
CDY66035	Canola	cytosol	73.65	78.46
PGSC0003DMT400008912	Potato	cytosol, plastid	71.84	78.04
CDX83325	Canola	cytosol	76.53	77.94
Bra000455.1-P	Field mustard	cytosol	76.53	77.94
Solyc01g097760.2.1	Tomato	nucleus	72.56	77.91
PGSC0003DMT400057989	Potato	cytosol	72.56	77.91
CDX80121	Canola	cytosol	73.65	77.57
Solyc06g064470.2.1	Tomato	nucleus	72.2	77.52
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	72.2	77.52
Solyc06g050120.2.1	Tomato	nucleus	72.2	77.22
VIT_14s0068g01640.t01	Wine grape	mitochondrion	83.03	76.67
CDY55535	Canola	extracellular	25.99	75.79
CDX95727	Canola	cytosol	76.17	75.63
CDX76668	Canola	extracellular	76.53	75.18
VIT_14s0083g00970.t01	Wine grape	plastid	81.23	74.75
KXG35979	Sorghum	cytosol, mitochondrion	88.09	73.72
PGSC0003DMT400015879	Potato	cytosol	38.99	73.47
PGSC0003DMT400083237	Potato	cytosol	65.34	72.69
CDY11453	Canola	cytosol	77.26	71.81
GSMUA_Achr6P21550_001	Banana	cytosol	89.53	71.47
EES03046	Sorghum	cytosol	16.61	67.65
Solyc10g018810.1.1	Tomato	cytosol	18.77	67.53
KXG25835	Sorghum	cytosol	16.25	66.18
GSMUA_Achr6P14640_001	Banana	cytosol	90.25	65.79
CDX92144	Canola	extracellular	72.92	62.35
Solyc01g020290.1.1	Tomato	cytosol	11.55	59.26
CDY03061	Canola	extracellular	22.02	57.01
Solyc11g042870.1.1	Tomato	cytosol	18.05	56.82
CDY25121	Canola	cytosol	76.17	54.52
Bra013849.1-P	Field mustard	cytosol	78.34	53.71
CDY34328	Canola	nucleus	77.62	53.22
CDY03403	Canola	cytosol	78.34	53.06
CDY08962	Canola	endoplasmic reticulum, extracellular	20.22	52.34
CDX92662	Canola	cytosol	72.2	48.31
Bra019201.1-P	Field mustard	cytosol	73.29	48.22
CDY11043	Canola	cytosol	73.29	48.22
Bra003512.1-P	Field mustard	cytosol	70.4	48.15
CDX67906	Canola	extracellular	74.37	46.5
CDY33717	Canola	cytosol	31.05	43.22
TraesCS4D01G148500.2	Wheat	cytosol	20.58	38.78
CDY55536	Canola	cytosol	8.3	22.12
CDX93958	Canola	cytosol	8.3	22.12
CDX89151	Canola	cytosol	8.3	21.9
CDY25120	Canola	cytosol	6.5	14.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSMUA_Achr11G10270_001	EnsemblPlants:GSMUA_Achr11P10270_001
EnsemblPlants:GSMUA_Achr11T10270_001	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	UniProt:M0RR07	PFAM:PF01248
PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8
InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI000296CA18
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L7a [Source:GMGC_GENE;Acc:GSMUA_Achr11G10270_001]

Coordinates

chr11:-:8082205..8088261

Molecular Weight (calculated)

31631.6 Da

IEP (calculated)

11.069

GRAVY (calculated)

-0.454

Length

277 amino acids

Sequence
(BLAST)

001: MSRAVDMLQN PIVSQRLEEM APKRGVKVPV PGKKKPEKVV NPLFEKRPKQ FGIGGALPPK KDLHRFVKWP KVVRIQRQRR ILKQRLKVPP ALNQFTRTLD
101: KNLATNLFKM LLKYRPEDRA AKKERLLKRA QAEAEGKTVE VKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEI PYCIVKGKAR
201: LGAIVHKKTA SVLCLTTVKN EDKLEFSKIL EAIKANFNDK FDEVRRKWGG GIMGTKSQAK SKAREKLLAK EAAQRLT

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.