Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P33210_001 | Banana | nucleus | 34.25 | 45.86 |
| HORVU2Hr1G048520.1 | Barley | plastid | 25.31 | 28.62 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 28.34 | 27.21 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 27.37 | 27.11 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 26.13 | 25.71 |
| EER99396 | Sorghum | plastid | 27.1 | 25.52 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 26.96 | 25.36 |
| Zm00001d006417_P002 | Maize | plastid | 18.98 | 23.51 |
| Os07t0499800-01 | Rice | nucleus | 23.52 | 22.74 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 22.28 | 22.22 |
| Bra023148.1-P | Field mustard | nucleus | 20.5 | 21.13 |
| AT2G34920.2 | Thale cress | nucleus | 18.98 | 20.72 |
| CDY02344 | Canola | cytosol | 19.53 | 20.64 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 17.61 | 20.55 |
| CDY31650 | Canola | nucleus, plastid | 18.16 | 20.5 |
| CDY12454 | Canola | nucleus | 18.16 | 20.47 |
| Bra005381.1-P | Field mustard | nucleus | 17.61 | 19.75 |
| CDY52188 | Canola | nucleus | 18.57 | 19.71 |
| Bra039871.1-P | Field mustard | nucleus | 18.84 | 19.52 |
| CDY09519 | Canola | nucleus | 18.98 | 19.25 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 17.61 | 18.91 |
| KRH37161 | Soybean | nucleus | 23.11 | 18.22 |
| KRH12155 | Soybean | nucleus | 22.56 | 17.88 |
| AT1G30860.1 | Thale cress | cytosol | 17.61 | 17.53 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 20.08 | 15.5 |
| CDX96975 | Canola | cytosol | 14.17 | 14.99 |
| PGSC0003DMT400035458 | Potato | nucleus | 21.05 | 14.78 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 19.81 | 14.6 |
| Solyc02g082100.2.1 | Tomato | vacuole | 20.22 | 13.64 |
| CDY14941 | Canola | nucleus | 10.59 | 12.4 |
| CDY50063 | Canola | cytosol | 18.02 | 11.92 |
| AT5G44690.1 | Thale cress | nucleus | 10.59 | 11.63 |
| AT4G20160.2 | Thale cress | cytosol | 19.26 | 11.54 |
| CDX78978 | Canola | cytosol | 16.78 | 10.78 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 10.32 | 9.96 |
| Bra013447.1-P | Field mustard | nucleus | 16.92 | 9.95 |
| GSMUA_Achr11P... | Banana | nucleus | 9.49 | 9.76 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 8.8 | 9.61 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 8.94 | 8.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.35 | 8.82 |
| GSMUA_Achr2P03990_001 | Banana | nucleus | 8.53 | 8.82 |
| GSMUA_Achr1P17370_001 | Banana | nucleus | 7.29 | 7.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P00390_001 | EnsemblPlants:GSMUA_Achr7T00390_001 | EnsemblPlantsGene:GSMUA_Achr7G00390_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000295EACC | UniProt:M0TDH9 | MapMan:35.2 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G00390_001]
Coordinates
chr7:+:319113..322821
Molecular Weight (calculated)
80762.3 Da
IEP (calculated)
6.341
GRAVY (calculated)
-0.666
Length
727 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVARIPS ADEWHDPGRL AAAVFGAARG RTSFTPANLK KVLVRQQQSK DVPSSSSSSS ALTAAGDSVA GEEDGGSPAT ARRRQSQIHH RWAVQQAREM
101: VTTIDRHAQQ AEISTLTTTS QPVSVRAASL LREASPSASE CSAGSAAVSS SCAGAGAGDL PPNVRASSLI QMWRELEAEA GLTPKHRTVC GGGTMENASA
201: ASFSADEPSG CNSDFSDESD AFVDWNSDMT TTANSSSSLA TNKTERLRST GSSSVLSPRR LRGRGEMENL VARMEKERRR ELAALAEHQH VSRFPYRGRL
301: QSMLRLKSLR RQVEVHDQMQ GPSTASELDQ LHNGSTISYL RERFNHIGQH CGGRKRALES SSSAHVQFPM DAEDTVYKSS AQVQFPMDAE GSAHTYSSDN
401: NQYQEIVIHP QIAPPETNSS YSRSDYLQEG SQSVDGSWDE RNLWVTNLDW QRPSNGWHGE AVAEELESYP QQNTSNWISR PSDPWTGWGA NRKPDAYHDL
501: FQNFSDNVEI RELLERRRVS TSLASDFCNK MNQLILSFLH RQTQQSFHEN SEETHVDYPF WQPSDEYCNA EQDASVSSSL VPLQYHTLHH PENWQHTSFT
601: HQSSHNLLDM EAMRDLRSDM AQIHEEISEL RALIESCMDW QAKLRQSIKH DIMDAIHQSG LHGSKAKPGG RGSCCICCEM QVDSLLYRCG HMCTCFKCAC
701: QLQWNSGLCP ICRSPIVDVV RTTFPNY
101: VTTIDRHAQQ AEISTLTTTS QPVSVRAASL LREASPSASE CSAGSAAVSS SCAGAGAGDL PPNVRASSLI QMWRELEAEA GLTPKHRTVC GGGTMENASA
201: ASFSADEPSG CNSDFSDESD AFVDWNSDMT TTANSSSSLA TNKTERLRST GSSSVLSPRR LRGRGEMENL VARMEKERRR ELAALAEHQH VSRFPYRGRL
301: QSMLRLKSLR RQVEVHDQMQ GPSTASELDQ LHNGSTISYL RERFNHIGQH CGGRKRALES SSSAHVQFPM DAEDTVYKSS AQVQFPMDAE GSAHTYSSDN
401: NQYQEIVIHP QIAPPETNSS YSRSDYLQEG SQSVDGSWDE RNLWVTNLDW QRPSNGWHGE AVAEELESYP QQNTSNWISR PSDPWTGWGA NRKPDAYHDL
501: FQNFSDNVEI RELLERRRVS TSLASDFCNK MNQLILSFLH RQTQQSFHEN SEETHVDYPF WQPSDEYCNA EQDASVSSSL VPLQYHTLHH PENWQHTSFT
601: HQSSHNLLDM EAMRDLRSDM AQIHEEISEL RALIESCMDW QAKLRQSIKH DIMDAIHQSG LHGSKAKPGG RGSCCICCEM QVDSLLYRCG HMCTCFKCAC
701: QLQWNSGLCP ICRSPIVDVV RTTFPNY
001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
Arabidopsis Description
EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.