Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 60.11 | 55.12 |
| GSMUA_Achr1P17370_001 | Banana | nucleus | 53.18 | 54.02 |
| GSMUA_Achr2P03990_001 | Banana | nucleus | 50.78 | 51.07 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 28.01 | 46.05 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 47.67 | 44.75 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 42.01 | 44.59 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 53.61 | 43.92 |
| PGSC0003DMT400070376 | Potato | nucleus | 52.48 | 42.94 |
| PGSC0003DMT400043571 | Potato | nucleus | 50.49 | 41.56 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 41.73 | 40.25 |
| Bra009452.1-P | Field mustard | nucleus | 46.82 | 39.55 |
| AT5G04460.1 | Thale cress | nucleus | 47.67 | 39.05 |
| Bra029846.1-P | Field mustard | nucleus | 40.17 | 36.74 |
| KRH66429 | Soybean | nucleus | 10.75 | 35.68 |
| Bra034121.1-P | Field mustard | nucleus | 40.31 | 35.62 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 39.32 | 34.24 |
| CDX71406 | Canola | cytosol | 22.35 | 28.26 |
| PGSC0003DMT400018447 | Potato | nucleus | 29.7 | 27.52 |
| AT2G27950.2 | Thale cress | nucleus | 31.54 | 26.58 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 32.25 | 26.39 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 28.01 | 25.92 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 7.78 | 10.13 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 9.76 | 9.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P07570_001 | EnsemblPlants:GSMUA_Achr11T07570_001 | EnsemblPlantsGene:GSMUA_Achr11G07570_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000294ED80 | UniProt:M0RQ87 | MapMan:35.2 |
Description
protein binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G07570_001]
Coordinates
chr11:+:5899532..5907572
Molecular Weight (calculated)
80007.6 Da
IEP (calculated)
4.780
GRAVY (calculated)
-0.910
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MADFRENDAD LEFRRGLEEL VRGHLDGCMT AAAALSSSSC AGGGGGEEDD EGGAASEAAA DQLARRRRSR WVARQAEDMI NTIERRNRES ELMALAGLHT
101: VSMLDPSFLR ESPRSPSAMA ERPVAAHASS ILQMWRELED MTAAARAEQR SNAAASTLGG RNRSEGQELG GGSDGQPEHV RRELLRLRGR QARLELIMRM
201: AAERQREIQT LSEHRAVSEF THRNRIQSLL RGRFLRNGLP AQDDQERPPS AAERELGQLR QHHRVSGLRE GFRFRLENIV RGQAISHPDT SANQSVFVTD
301: QSEASTVAEL LNDNHEEAQT RSEDINVLQT IESRETPELD SGSRNDTLDM QEYATEVIGQ QEENRERERG GWEPNADGGF GDWHEETEEG FNGNLQENMD
401: QDWPYQTTAG YDVGEDSRMP EVHEEWHEDE PPDAAETWQD ELQSDPPIDR RSSPIRRGNR FIPPDDENVY SMELRELLSR RSVSNLLHSG FRESLDQLIQ
501: SYVQRQGRTP FDWDLQRPLP TPNPGDNQDQ RGYDPNQNIQ DPVARRNNVF PPPPLPPRPP LWHSDLHHNN WARQNMHRSE IEWDAINDLR TEMARLQQGM
601: SNMQRMLEAC LDMQVELQRA IRQEVSAALN RTDGGLTGES SEDGSKWDQV RKGTCCVCCD NHIDSLLYRC GHMCTCSKCA SELVRSGGKC PLCRAPIVEV
701: VRAYSVL
101: VSMLDPSFLR ESPRSPSAMA ERPVAAHASS ILQMWRELED MTAAARAEQR SNAAASTLGG RNRSEGQELG GGSDGQPEHV RRELLRLRGR QARLELIMRM
201: AAERQREIQT LSEHRAVSEF THRNRIQSLL RGRFLRNGLP AQDDQERPPS AAERELGQLR QHHRVSGLRE GFRFRLENIV RGQAISHPDT SANQSVFVTD
301: QSEASTVAEL LNDNHEEAQT RSEDINVLQT IESRETPELD SGSRNDTLDM QEYATEVIGQ QEENRERERG GWEPNADGGF GDWHEETEEG FNGNLQENMD
401: QDWPYQTTAG YDVGEDSRMP EVHEEWHEDE PPDAAETWQD ELQSDPPIDR RSSPIRRGNR FIPPDDENVY SMELRELLSR RSVSNLLHSG FRESLDQLIQ
501: SYVQRQGRTP FDWDLQRPLP TPNPGDNQDQ RGYDPNQNIQ DPVARRNNVF PPPPLPPRPP LWHSDLHHNN WARQNMHRSE IEWDAINDLR TEMARLQQGM
601: SNMQRMLEAC LDMQVELQRA IRQEVSAALN RTDGGLTGES SEDGSKWDQV RKGTCCVCCD NHIDSLLYRC GHMCTCSKCA SELVRSGGKC PLCRAPIVEV
701: VRAYSVL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.