Factsheet for VIT_06s0061g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g05390.t01	Wine grape	nucleus	48.15	45.31
KRH25125	Soybean	nucleus	47.41	45.08
CDY04520	Canola	cytosol, plastid	37.44	44.84
GSMUA_Achr1P00380_001	Banana	nucleus	36.7	44.74
KRH30548	Soybean	nucleus	47.29	44.65
GSMUA_Achr1P17370_001	Banana	nucleus	37.81	44.11
GSMUA_AchrUn_...	Banana	nucleus	39.66	41.76
KRH22786	Soybean	nucleus	43.47	41.58
KRH26545	Soybean	nucleus	40.52	41.33
GSMUA_Achr5P12430_001	Banana	nucleus	37.07	41.06
Zm00001d019766_P001	Maize	nucleus	10.1	41.0
Os09t0570500-01	Rice	nucleus	22.41	40.35
Bra011990.1-P	Field mustard	nucleus, plastid	37.81	40.18
Zm00001d019765_P001	Maize	nucleus	18.47	40.11
GSMUA_Achr8P11220_001	Banana	nucleus	37.19	40.11
GSMUA_Achr11P...	Banana	nucleus	34.24	39.32
AT2G27950.2	Thale cress	nucleus	40.52	39.21
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	26.35	39.05
Solyc11g066500.1.1	Tomato	nucleus, plastid	38.55	38.64
KXG35138	Sorghum	nucleus	33.0	38.29
PGSC0003DMT400018447	Potato	nucleus	34.36	36.57
Os02t0823300-01	Rice	nucleus	33.62	36.21
EES06049	Sorghum	nucleus	33.74	35.91
Solyc06g074760.1.1	Tomato	nucleus	33.74	35.77
PGSC0003DMT400001109	Potato	mitochondrion	37.93	35.65
GSMUA_Achr2P03990_001	Banana	nucleus	30.79	35.56
OQU93435	Sorghum	nucleus	28.45	35.38
TraesCS4D01G003000.2	Wheat	nucleus	30.79	35.11
TraesCS6A01G405400.1	Wheat	nucleus	32.14	34.07
HORVU6Hr1G092920.1	Barley	cytosol	26.85	33.96
TraesCS6B01G449800.2	Wheat	nucleus	32.02	33.85
TraesCS6D01G389100.1	Wheat	nucleus	31.53	33.42
TraesCS4B01G003100.1	Wheat	nucleus	29.19	33.33
Zm00001d027308_P001	Maize	nucleus	27.34	33.18
TraesCS4A01G311200.1	Wheat	nucleus	29.19	33.15
HORVU4Hr1G086680.2	Barley	mitochondrion	17.73	33.1
Zm00001d051871_P002	Maize	nucleus	33.5	32.38
TraesCS4D01G354300.1	Wheat	plastid	25.62	29.34
TraesCS5A01G529500.1	Wheat	plastid	25.25	28.55
VIT_01s0010g00340.t01	Wine grape	nucleus	8.37	9.33

Protein Annotations

EntrezGene:100243144	wikigene:100243144	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB44211	ProteinID:CCB44211.1
ncoils:Coil	UniProt:F6GW76	EMBL:FN594957	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100243144	wikigene:LOC100243144
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	UniParc:UPI00019837CD
ArrayExpress:VIT_06s0061g00860	EnsemblPlantsGene:VIT_06s0061g00860	EnsemblPlants:VIT_06s0061g00860.t01	unigene:Vvi.15790	RefSeq:XP_002272391	RefSeq:XP_002272391.2
RefSeq:XP_010651751.1	RefSeq:XP_010651752.1	RefSeq:XP_010651753.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr6:+:18394099..18401841

Molecular Weight (calculated)

92220.8 Da

IEP (calculated)

4.381

GRAVY (calculated)

-0.877

Length

812 amino acids

Sequence
(BLAST)

001: MAIAGLHNVS VLDSPFLRES QSPVSSRRSD QARLSTQTSS PRQMWRDLED EQVGQGPGRR QGRFQQQRSD ELNTDLSSVT VSESQRSVDG GGLDRLSEVE
101: YGPWSQSQAG SQNENDDSNG LGCEPSPDFG DVERERVRQI FRDWMNSGMM GHTSNVSQVN NTTRAQWLGE TEQERVRIVR EWVQMTSQPR GTLSARREEQ
201: VAEIGAQIER VRDGLVVNCH EGQTEPVRRV GILRLCGRQA LLDMLVRTGR ERQRELQQLS EHSVVSDFAH RNRIQSLLRG RFLRNNRLAE DERPASVAAS
301: ELGLLRQRRT VSGLREGFLS RLDNSVCGSS NCSDTLSDSD IDGYGHDQNQ ANSSLEVLDE IHDQSEQSQI ISDIHDTTNV LEGNSFEDIN QQESTAQVQE
401: WQEQVLENED RGWQQSDGVG SIEVRSGNAE DSEGNWQENS QEILRNEGGQ DHLQEAHEEF QEQLEPSSRE NDAHGLSVNT NDLEGDTIEN VNWQNSIAQV
501: EEWQEQVREN EEASGSEGGE HGFQEEAHDS WHEVSSQEVA ENWLEGPSDQ EAVMVGRVDR FYFPDDDNVY NMELRELLSR RSVSNLLRSG FRENLDRLIQ
601: SYVERQVHDP VDWEPHGTSS LPASAEQDQE QQTGDQNEGR TDDVESPPSV LPSSLVPRFL PLWDQELHHD NWSQQNMHPR FGMEWEVIND LRIDLARLQQ
701: RMNNMQRMLE ACMDMQLELQ RSIKQEVSAA LNRSVGSPEV NEECLPKDGS KWDHVRKGIC CICCDSHIDS LLYRCGHMCT CSKCASELVQ GRGKCPMCWA
801: PVVEVIRAYS IL

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.