Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G311200.1 | Wheat | nucleus | 90.3 | 89.79 |
| TraesCS4D01G003000.2 | Wheat | nucleus | 63.01 | 62.92 |
| HORVU4Hr1G000090.6 | Barley | cytosol, mitochondrion, nucleus | 47.26 | 61.31 |
| Zm00001d019766_P001 | Maize | nucleus | 13.92 | 49.5 |
| KXG35138 | Sorghum | nucleus | 47.54 | 48.29 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 23.63 | 39.07 |
| KRH66429 | Soybean | nucleus | 11.25 | 37.56 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 34.32 | 36.64 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 36.99 | 34.93 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 35.44 | 34.38 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 35.02 | 32.42 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 38.54 | 31.75 |
| PGSC0003DMT400070376 | Potato | nucleus | 38.12 | 31.37 |
| PGSC0003DMT400043571 | Potato | nucleus | 37.55 | 31.08 |
| Bra029846.1-P | Field mustard | nucleus | 32.77 | 30.14 |
| Bra009452.1-P | Field mustard | nucleus | 34.88 | 29.63 |
| AT5G04460.1 | Thale cress | nucleus | 35.87 | 29.55 |
| Bra034121.1-P | Field mustard | nucleus | 33.19 | 29.5 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 33.33 | 29.19 |
| CDX71406 | Canola | cytosol | 21.52 | 27.37 |
| PGSC0003DMT400018447 | Potato | nucleus | 27.14 | 25.29 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.18 | 23.43 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 28.41 | 23.38 |
| AT2G27950.2 | Thale cress | nucleus | 27.0 | 22.88 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 8.16 | 7.9 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G003100.1 | EnsemblPlantsGene:TraesCS4B01G003100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:1781032..1784884
Molecular Weight (calculated)
79881.7 Da
IEP (calculated)
4.837
GRAVY (calculated)
-0.951
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPPPVTA PRRRPRREPS EPRSESDWEE GSSSREGSPG ADSADGDAVR RAARRWSDDH PARISATPAD AGWWLGEIER ERVRLVRDWV QVQVQMEAAR
101: DRDQGADDPP HPPPSPAAGP RIRGRQARLE LVMRLAADRH AELQRLSLRR AVSGFPHRNR IHALLRGRFL RNGGLPEEER RQPSVAAREL GQLRQRHPVS
201: GLRLENLVRG QAASRSDSSS AQTVELSTID HSESSRTASS EDTQDTRQQA NDNVGLQRIG DAATGSDYGS NAPSIAEGLS EPHSQEEGWQ EDLEVVERRR
301: DWDQFSHAIT TTGEGSERNW IEIADSSSSS SDERTTEAGD HQGASYLLET SDESTISDTN LPEAHEEQLD SNHLPEALEG NNHLQEARGE WNREGNDPAE
401: VRDEWHSGGH FPEVNEVWHD DDESNGSAHN WHDDHSEQPV DQESTLIRRV NTFTPGDDDN VYSTELRELL SRRSVSNLLD SAFRENLDRL IRSYVERQGR
501: GPLSLNLQGT PAVAAAAPDP QEQGQEEQQH GDDDEEHQLL RDAASVRPRL VIPPPPMPPR QPLWHSELHH NNWMRQNINR SDIEWEAISD LRADMARLQQ
601: GMGHMQRMLE ACMDMQLELQ RSVRQEVSAA LNRFIGEQGE PKETIDDGSK WMNVRKGTCC VCCDTPIDSL LYRCGHMCTC SKCANELVRS GGKCPLCRAP
701: IIEVIRAYFI M
101: DRDQGADDPP HPPPSPAAGP RIRGRQARLE LVMRLAADRH AELQRLSLRR AVSGFPHRNR IHALLRGRFL RNGGLPEEER RQPSVAAREL GQLRQRHPVS
201: GLRLENLVRG QAASRSDSSS AQTVELSTID HSESSRTASS EDTQDTRQQA NDNVGLQRIG DAATGSDYGS NAPSIAEGLS EPHSQEEGWQ EDLEVVERRR
301: DWDQFSHAIT TTGEGSERNW IEIADSSSSS SDERTTEAGD HQGASYLLET SDESTISDTN LPEAHEEQLD SNHLPEALEG NNHLQEARGE WNREGNDPAE
401: VRDEWHSGGH FPEVNEVWHD DDESNGSAHN WHDDHSEQPV DQESTLIRRV NTFTPGDDDN VYSTELRELL SRRSVSNLLD SAFRENLDRL IRSYVERQGR
501: GPLSLNLQGT PAVAAAAPDP QEQGQEEQQH GDDDEEHQLL RDAASVRPRL VIPPPPMPPR QPLWHSELHH NNWMRQNINR SDIEWEAISD LRADMARLQQ
601: GMGHMQRMLE ACMDMQLELQ RSVRQEVSAA LNRFIGEQGE PKETIDDGSK WMNVRKGTCC VCCDTPIDSL LYRCGHMCTC SKCANELVRS GGKCPLCRAP
701: IIEVIRAYFI M
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.