Factsheet for VIT_13s0019g05390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34682	Soybean	nucleus	72.65	73.85
KRG92104	Soybean	nucleus	72.07	73.35
Solyc11g007910.1.1	Tomato	nucleus	69.18	71.24
PGSC0003DMT400070376	Potato	nucleus	70.8	70.72
PGSC0003DMT400043571	Potato	nucleus	67.32	67.64
AT5G04460.1	Thale cress	nucleus	61.88	61.88
Solyc03g071670.1.1	Tomato	nucleus	31.75	61.3
CDX70223	Canola	cytosol	53.3	59.35
CDY44857	Canola	nucleus	53.07	58.94
Bra009452.1-P	Field mustard	nucleus	56.43	58.18
CDY08599	Canola	nucleus	46.58	55.6
GSMUA_AchrUn_...	Banana	nucleus	49.48	55.38
CDY41355	Canola	nucleus	48.2	55.25
Bra029846.1-P	Field mustard	nucleus	48.9	54.59
GSMUA_Achr11P...	Banana	nucleus	43.92	53.61
GSMUA_Achr1P17370_001	Banana	nucleus	43.11	53.45
Bra034121.1-P	Field mustard	nucleus	49.48	53.38
CDY00948	Canola	cytosol	43.22	51.73
GSMUA_Achr8P11220_001	Banana	nucleus	44.96	51.53
GSMUA_Achr1P00380_001	Banana	nucleus	38.59	50.0
Os09t0570500-01	Rice	nucleus	25.26	48.34
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	45.31	48.15
Zm00001d019766_P001	Maize	nucleus	10.89	47.0
GSMUA_Achr5P12430_001	Banana	nucleus	39.51	46.52
EES06049	Sorghum	nucleus	40.79	46.13
Os02t0823300-01	Rice	nucleus	39.75	45.49
KXG35138	Sorghum	nucleus	36.38	44.86
Zm00001d019765_P001	Maize	nucleus	19.35	44.65
TraesCS6A01G405400.1	Wheat	nucleus	38.82	43.73
TraesCS6B01G449800.2	Wheat	nucleus	38.7	43.49
TraesCS6D01G389100.1	Wheat	nucleus	38.35	43.21
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	27.35	43.07
GSMUA_Achr2P03990_001	Banana	nucleus	34.76	42.67
TraesCS4D01G003000.2	Wheat	nucleus	33.84	41.01
Zm00001d051871_P002	Maize	nucleus	39.75	40.83
OQU93435	Sorghum	nucleus	30.36	40.12
Zm00001d027308_P001	Maize	nucleus	30.59	39.46
TraesCS4A01G311200.1	Wheat	nucleus	32.33	39.02
HORVU6Hr1G092920.1	Barley	cytosol	28.97	38.94
TraesCS4B01G003100.1	Wheat	nucleus	31.75	38.54
HORVU4Hr1G086680.2	Barley	mitochondrion	18.42	36.55
TraesCS4D01G354300.1	Wheat	plastid	28.85	35.12
TraesCS5A01G529500.1	Wheat	plastid	28.97	34.82
VIT_01s0010g00340.t01	Wine grape	nucleus	10.2	12.07

Protein Annotations

EntrezGene:100241098	wikigene:100241098	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB56123	ProteinID:CCB56123.1
ncoils:Coil	UniProt:F6HNA4	EMBL:FN595998	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100241098	wikigene:LOC100241098
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	TIGR:TC53098
TIGR:TC68622	UniParc:UPI0002109673	ArrayExpress:VIT_13s0019g05390	EnsemblPlantsGene:VIT_13s0019g05390	EnsemblPlants:VIT_13s0019g05390.t01	unigene:Vvi.5977
RefSeq:XP_002263930	RefSeq:XP_002263930.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:7290363..7300194

Molecular Weight (calculated)

99019.9 Da

IEP (calculated)

5.052

GRAVY (calculated)

-1.099

Length

863 amino acids

Sequence
(BLAST)

001: MTDFQPLQQK PESTDARSDF ERGLEELMRG HLDDCMSFAS CSTMRNPEDE DEEGDQLVRR RRRSDLEGDD LAESSAARRR HSRILSRWAA RQAQEMITTI
101: ERRNRETELM ALAGLHSVST LDFSFLRGSQ SPTSRQGAVD RPSSQASSIL QMWRELEDEH VLDHARERVR ERLRQQRSVE SNTNASIMSE SRGSENQGSL
201: EDASESENDY GTWSHDQVEQ PNDRAENNGS SREQSPDIGE IERERVRQIV RGWMDSGMSD HSTNVTRRNN SPRAEWLGET ERERVRNIRE WVQMASQQRG
301: SRGGRREGQI AGVGAQVDRA REGLVADQDE GQPEHIRRDV LRFRGRQALL DLLVRIETER QRELQGLLEH RAVSDFAHRN RIQSFLRGRF LRNERPIEEE
401: RPPSMAASEL VQLRQRHTVS GLREGFRSRL ENIVRGQVSS HSDTQTNNNS NDSTNNQTQT NTSQELQHEN NEQSQPRSQE NDIQLPEDLA GNMESTTPIE
501: SMNWQETANQ GGNWHEQAAA DERENWQQST YDEFNDWRDG AAEDMDGTWQ ENSVNDWPQG SPGNAHGGEV VPQETHGGWS ENVSREAVES WSEGPSDPPR
601: TRRTVPVRRI NRFHPPDDDN VYSMELRELL SRRSVSNLLR SGFRESLDQL IQSYVERQGR APIDWDLHRN LPTPASPEQD EEQQRDEQNE DQRDSIARPS
701: LVLPSPPVPP PQPLWHQDLH HTNWPRHSMH RSEIQEWEMI NDLRADMAKL QQGMNHMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGEP GMSVETSEDG
801: SKWGHVRKGT CCVCCDSHID SLLYRCGHMC TCSKCANELV RGGGKCPLCR APIVEVIRAY SIL

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.