CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92104	Soybean	nucleus	95.64	95.75
VIT_13s0019g05390.t01	Wine grape	nucleus	73.85	72.65
Solyc11g007910.1.1	Tomato	nucleus	67.14	68.02
PGSC0003DMT400070376	Potato	nucleus	68.08	66.9
PGSC0003DMT400043571	Potato	nucleus	65.02	64.26
AT5G04460.1	Thale cress	nucleus	62.54	61.53
Solyc03g071670.1.1	Tomato	nucleus	32.39	61.52
CDX70223	Canola	cytosol	53.12	58.19
CDY44857	Canola	nucleus	52.18	57.01
Bra009452.1-P	Field mustard	nucleus	56.18	56.99
CDY08599	Canola	nucleus	46.64	54.77
Bra029846.1-P	Field mustard	nucleus	49.47	54.33
CDY41355	Canola	nucleus	48.17	54.32
Bra034121.1-P	Field mustard	nucleus	48.88	51.88
CDY00948	Canola	cytosol	43.46	51.18
KRH66429	Soybean	nucleus	11.07	44.13
KRH30548	Soybean	nucleus	40.99	40.47
KRH25125	Soybean	nucleus	39.93	39.7
KRH22786	Soybean	nucleus	38.04	38.04
KRH26545	Soybean	nucleus	34.75	37.06
KRH12155	Soybean	nucleus	10.25	9.49
KRH37161	Soybean	nucleus	10.25	9.44

Protein Annotations

EntrezGene:100784174	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02006612	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G198600
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1LCN4
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH34682	ProteinID:KRH34682	ProteinID:KRH34682.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	UniParc:UPI000233D515	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:42979388..42985630

Molecular Weight (calculated)

96500.3 Da

IEP (calculated)

5.910

GRAVY (calculated)

-1.041

Length

849 amino acids

Sequence
(BLAST)

001: MTDFQPLQQK PEPADAHAEF ELGLEEFMRG HLDDCMSFAS CSSSRAPDDE DDEGDQLVRR RRRSDLEGDD LAESSAARRR HSRILSRWAA RQAQEMITTI
101: ERRNRESELM ALAGLHTVSM LDSSFLRGSQ SPTSGQEGAV ERPSTQASAI LQMWRELEDE HLLNRARERM RVRLRHQRNS DSHTNVSSTM SDSRGSENQG
201: SLGDASESEN DYGTWSHDQT GSRNAHGDHN GSSREQSLDL GEVERERVRQ IVQGWMESGI SDHSSNVSQI NNSRRAEWLG ETERERVRNI REWVQMISQQ
301: RGSRGSRRDA QVSEGAQADR ARGLVADNDE SQPEHVRRDM SRLRGRQALV DLLVRIERER QRELQGLLEH RAVSDFAHRN RIQSLLRGRF LRNERTVEDE
401: RPLSMAASEL VQLRQRHTVS GLREGFRSRL ENIVRGQAGT SPDTTSNSNA SETRGDESQA NSLVDGQQEN YEQQQIRSLE TDVRQLPNRT GTLESSTSES
501: ISWQEASNQG GNWQEQIAEE GGGNWRQSPF NQTRDGRAVG DWPQETPRNL AGEDPHPREA QRIWHDGNTR ETVGNWSEGP SGATRNRRGV PIRRFNRFHP
601: PDDDNVYSME LRELLSRRSV SNLLRSGFRE SLDQLIQSYV ERQGRAPIDW DLHQNLPAST PASPEQDPDQ QGEERDEGQH ETINRPSLVL PSPPVPPPQP
701: LWHQDLHQTG WSRHSMHRSE IEWEIMNDLR SDMARLQQGM NHMQRMLEAC MDMQLELQRS VRQEVSAALN RSGGENGSSA ETSDDGSKWG HVKKGTCCVC
801: CDNHIDSLLY RCGHMCTCSK CANELIRGGG KCPLCRAPIL EVVRAYSIL

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.